Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_M17
(515 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z96047-2|CAB09411.1| 566|Caenorhabditis elegans Hypothetical pr... 96 2e-20
X74027-1|CAA52188.1| 566|Caenorhabditis elegans lamin protein. 94 6e-20
U49831-7|AAA93408.1| 558|Caenorhabditis elegans Intermediate fi... 52 2e-07
U49831-6|AAA93407.1| 589|Caenorhabditis elegans Intermediate fi... 52 2e-07
Z73423-7|CAL36497.1| 567|Caenorhabditis elegans Hypothetical pr... 50 1e-06
Z73423-6|CAD44093.1| 575|Caenorhabditis elegans Hypothetical pr... 50 1e-06
Z73423-5|CAA97777.3| 575|Caenorhabditis elegans Hypothetical pr... 50 1e-06
Z50045-6|CAL36494.1| 567|Caenorhabditis elegans Hypothetical pr... 50 1e-06
Z50045-5|CAD44129.1| 575|Caenorhabditis elegans Hypothetical pr... 50 1e-06
Z50045-4|CAA90365.3| 575|Caenorhabditis elegans Hypothetical pr... 50 1e-06
X70830-1|CAA50178.1| 534|Caenorhabditis elegans Cytoplasmic int... 48 4e-06
X70834-1|CAA50182.1| 592|Caenorhabditis elegans Cytoplasmic int... 46 1e-05
X70833-1|CAA50181.1| 575|Caenorhabditis elegans Cytoplasmic int... 46 2e-05
U29379-3|AAF99979.3| 558|Caenorhabditis elegans Intermediate fi... 46 2e-05
Z81140-5|CAB03487.4| 581|Caenorhabditis elegans Hypothetical pr... 38 0.004
Z81140-2|CAB03486.1| 581|Caenorhabditis elegans Hypothetical pr... 38 0.004
Z54282-5|CAA91057.4| 581|Caenorhabditis elegans Hypothetical pr... 38 0.004
X70835-1|CAA50183.1| 581|Caenorhabditis elegans Cytoplasmic int... 38 0.004
X70831-1|CAA50179.1| 581|Caenorhabditis elegans Cytoplasmic int... 38 0.004
U49831-2|AAK68314.1| 526|Caenorhabditis elegans Intermediate fi... 34 0.052
X78553-1|CAA55296.1| 543|Caenorhabditis elegans cytoplasmic int... 33 0.16
U49831-1|AAA93405.1| 543|Caenorhabditis elegans Intermediate fi... 33 0.16
Z75547-4|CAA99900.1| 201|Caenorhabditis elegans Hypothetical pr... 31 0.49
U61953-6|AAO91706.1| 341|Caenorhabditis elegans Hypothetical pr... 30 0.85
Z70311-10|CAA94377.3| 602|Caenorhabditis elegans Hypothetical p... 29 2.6
AF016417-1|AAK68335.1| 241|Caenorhabditis elegans Hypothetical ... 28 4.6
AL132951-9|CAC44304.3| 553|Caenorhabditis elegans Hypothetical ... 27 6.0
U80846-5|AAP82647.1| 825|Caenorhabditis elegans Hypothetical pr... 27 8.0
U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical pr... 27 8.0
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr... 27 8.0
U55373-1|AAC25894.1| 1829|Caenorhabditis elegans Lethal protein ... 27 8.0
AF308445-1|AAG29838.1| 1829|Caenorhabditis elegans LET-418 protein. 27 8.0
AF039710-10|AAB96693.2| 393|Caenorhabditis elegans Hypothetical... 27 8.0
>Z96047-2|CAB09411.1| 566|Caenorhabditis elegans Hypothetical
protein DY3.2 protein.
Length = 566
Score = 95.9 bits (228), Expect = 2e-20
Identities = 55/164 (33%), Positives = 88/164 (53%), Gaps = 5/164 (3%)
Frame = +2
Query: 32 LREYATLMDIKISLDLEIATYRALIEGEEDRLNLTTQSPGREXXXXXXXXXXXXXXXXXL 211
+ E+ L+D+KI LD E+ TY+AL+EGEE+RLNLT ++P
Sbjct: 356 MSEFHDLLDVKIQLDAELKTYQALLEGEEERLNLTQEAPQNTSVHHVSFS---------- 405
Query: 212 TPSRRGTPLRAARKRTLLDESEERSVQDY-----SVTASAKGDLEVAEACPDGQFVKIRN 376
S + R ++R ++D + E DY + G + + E +G++V++ N
Sbjct: 406 --SGGASAQRGVKRRRVVDVNGEDQDIDYLNRRSKLNKETVGPVGIDEVDEEGKWVRVAN 463
Query: 377 NGTKELSLGGYSILRNAGDQETVFKFHRTVKLEPGAVSTVWSAD 508
N +E S+GGY ++ AG++E F+F +KL P A +TVWSAD
Sbjct: 464 NSEEEQSIGGYKLVVKAGNKEASFQFSSRMKLAPHASATVWSAD 507
>X74027-1|CAA52188.1| 566|Caenorhabditis elegans lamin protein.
Length = 566
Score = 93.9 bits (223), Expect = 6e-20
Identities = 54/164 (32%), Positives = 87/164 (53%), Gaps = 5/164 (3%)
Frame = +2
Query: 32 LREYATLMDIKISLDLEIATYRALIEGEEDRLNLTTQSPGREXXXXXXXXXXXXXXXXXL 211
+ E+ L+D+KI LD E+ TY+AL+EGEE+RLNLT ++P
Sbjct: 356 MSEFHDLLDVKIQLDAELKTYQALLEGEEERLNLTQEAPQNTSVHHVSFS---------- 405
Query: 212 TPSRRGTPLRAARKRTLLDESEERSVQDY-----SVTASAKGDLEVAEACPDGQFVKIRN 376
S + R ++R ++D + E DY + G + + E +G++V++ N
Sbjct: 406 --SGGASAQRGVKRRRVVDVNGEDQDIDYLNRRSKLNKETVGPVGIDEVDEEGKWVRVAN 463
Query: 377 NGTKELSLGGYSILRNAGDQETVFKFHRTVKLEPGAVSTVWSAD 508
N +E S+GGY ++ AG++E F+F +KL P +TVWSAD
Sbjct: 464 NSEEEQSIGGYKLVVKAGNKEASFQFSSRMKLAPHRSATVWSAD 507
>U49831-7|AAA93408.1| 558|Caenorhabditis elegans Intermediate
filament, b protein1, isoform a protein.
Length = 558
Score = 52.0 bits (119), Expect = 2e-07
Identities = 49/169 (28%), Positives = 76/169 (44%), Gaps = 3/169 (1%)
Frame = +2
Query: 11 IRHEAAQL-REYATLMDIKISLDLEIATYRALIEGEEDRLNLTTQSPGREXXXXXXXXXX 187
+R E L E L+D K LD EIA YR ++EGEE R+ L TQ +
Sbjct: 363 MREECQTLVAELQALLDTKQMLDAEIAIYRKMLEGEETRVGL-TQMVEQAVKTHSLQQQE 421
Query: 188 XXXXXXXLTPSRRGTPLRAARKRTLLDESEERSVQDYSVTASAKGDLEVAEACPDGQFVK 367
T S R + K T SAKG++ ++E P+G+F+K
Sbjct: 422 N-------TDSTRSVRGEVSTKTTF--------------QRSAKGNVTISECDPNGKFIK 460
Query: 368 IRN-NGTKELSLGGYSILRNA-GDQETVFKFHRTVKLEPGAVSTVWSAD 508
+ N + K+ ++G + I R G +E V+ V ++PG T+++ D
Sbjct: 461 LENSHRNKDENVGEHKIRRKLDGRREIVYSIPANVVIKPGKNLTIYARD 509
>U49831-6|AAA93407.1| 589|Caenorhabditis elegans Intermediate
filament, b protein1, isoform b protein.
Length = 589
Score = 52.0 bits (119), Expect = 2e-07
Identities = 49/169 (28%), Positives = 76/169 (44%), Gaps = 3/169 (1%)
Frame = +2
Query: 11 IRHEAAQL-REYATLMDIKISLDLEIATYRALIEGEEDRLNLTTQSPGREXXXXXXXXXX 187
+R E L E L+D K LD EIA YR ++EGEE R+ L TQ +
Sbjct: 394 MREECQTLVAELQALLDTKQMLDAEIAIYRKMLEGEETRVGL-TQMVEQAVKTHSLQQQE 452
Query: 188 XXXXXXXLTPSRRGTPLRAARKRTLLDESEERSVQDYSVTASAKGDLEVAEACPDGQFVK 367
T S R + K T SAKG++ ++E P+G+F+K
Sbjct: 453 N-------TDSTRSVRGEVSTKTTF--------------QRSAKGNVTISECDPNGKFIK 491
Query: 368 IRN-NGTKELSLGGYSILRNA-GDQETVFKFHRTVKLEPGAVSTVWSAD 508
+ N + K+ ++G + I R G +E V+ V ++PG T+++ D
Sbjct: 492 LENSHRNKDENVGEHKIRRKLDGRREIVYSIPANVVIKPGKNLTIYARD 540
>Z73423-7|CAL36497.1| 567|Caenorhabditis elegans Hypothetical
protein F38B2.1c protein.
Length = 567
Score = 49.6 bits (113), Expect = 1e-06
Identities = 43/161 (26%), Positives = 72/161 (44%), Gaps = 2/161 (1%)
Frame = +2
Query: 26 AQLREYATLMDIKISLDLEIATYRALIEGEEDRLNLTTQSPGREXXXXXXXXXXXXXXXX 205
A + E L+D K +LD EIA YR ++EGEE+R L
Sbjct: 381 ALMVELQMLLDTKQTLDAEIAIYRKMLEGEENRAGLKQ-------------LVEQVVKTH 427
Query: 206 XLTPSRRGTPLRAARKRTLLDESEERSVQDYSVTASAKGDLEVAEACPDGQFVKIRN-NG 382
+T +R + T +S +RS AKG++ + EA PDG+F+ ++N +
Sbjct: 428 AITQETDTETMRVVKGETASRQSFQRS---------AKGNVSIHEASPDGKFIVLQNTHR 478
Query: 383 TKELSLGGYSILRNA-GDQETVFKFHRTVKLEPGAVSTVWS 502
K+ ++G + + R G +E V+ R L G +++
Sbjct: 479 AKDEAIGEWKLKRRIDGKRENVYTLPRDFVLRAGKTLKIFA 519
>Z73423-6|CAD44093.1| 575|Caenorhabditis elegans Hypothetical
protein F38B2.1b protein.
Length = 575
Score = 49.6 bits (113), Expect = 1e-06
Identities = 43/161 (26%), Positives = 72/161 (44%), Gaps = 2/161 (1%)
Frame = +2
Query: 26 AQLREYATLMDIKISLDLEIATYRALIEGEEDRLNLTTQSPGREXXXXXXXXXXXXXXXX 205
A + E L+D K +LD EIA YR ++EGEE+R L
Sbjct: 389 ALMVELQMLLDTKQTLDAEIAIYRKMLEGEENRAGLKQ-------------LVEQVVKTH 435
Query: 206 XLTPSRRGTPLRAARKRTLLDESEERSVQDYSVTASAKGDLEVAEACPDGQFVKIRN-NG 382
+T +R + T +S +RS AKG++ + EA PDG+F+ ++N +
Sbjct: 436 AITQETDTETMRVVKGETASRQSFQRS---------AKGNVSIHEASPDGKFIVLQNTHR 486
Query: 383 TKELSLGGYSILRNA-GDQETVFKFHRTVKLEPGAVSTVWS 502
K+ ++G + + R G +E V+ R L G +++
Sbjct: 487 AKDEAIGEWKLKRRIDGKRENVYTLPRDFVLRAGKTLKIFA 527
>Z73423-5|CAA97777.3| 575|Caenorhabditis elegans Hypothetical
protein F38B2.1a protein.
Length = 575
Score = 49.6 bits (113), Expect = 1e-06
Identities = 43/161 (26%), Positives = 72/161 (44%), Gaps = 2/161 (1%)
Frame = +2
Query: 26 AQLREYATLMDIKISLDLEIATYRALIEGEEDRLNLTTQSPGREXXXXXXXXXXXXXXXX 205
A + E L+D K +LD EIA YR ++EGEE+R L
Sbjct: 389 ALMVELQMLLDTKQTLDAEIAIYRKMLEGEENRAGLKQ-------------LVEQVVKTH 435
Query: 206 XLTPSRRGTPLRAARKRTLLDESEERSVQDYSVTASAKGDLEVAEACPDGQFVKIRN-NG 382
+T +R + T +S +RS AKG++ + EA PDG+F+ ++N +
Sbjct: 436 AITQETDTETMRVVKGETASRQSFQRS---------AKGNVSIHEASPDGKFIVLQNTHR 486
Query: 383 TKELSLGGYSILRNA-GDQETVFKFHRTVKLEPGAVSTVWS 502
K+ ++G + + R G +E V+ R L G +++
Sbjct: 487 AKDEAIGEWKLKRRIDGKRENVYTLPRDFVLRAGKTLKIFA 527
>Z50045-6|CAL36494.1| 567|Caenorhabditis elegans Hypothetical
protein F38B2.1c protein.
Length = 567
Score = 49.6 bits (113), Expect = 1e-06
Identities = 43/161 (26%), Positives = 72/161 (44%), Gaps = 2/161 (1%)
Frame = +2
Query: 26 AQLREYATLMDIKISLDLEIATYRALIEGEEDRLNLTTQSPGREXXXXXXXXXXXXXXXX 205
A + E L+D K +LD EIA YR ++EGEE+R L
Sbjct: 381 ALMVELQMLLDTKQTLDAEIAIYRKMLEGEENRAGLKQ-------------LVEQVVKTH 427
Query: 206 XLTPSRRGTPLRAARKRTLLDESEERSVQDYSVTASAKGDLEVAEACPDGQFVKIRN-NG 382
+T +R + T +S +RS AKG++ + EA PDG+F+ ++N +
Sbjct: 428 AITQETDTETMRVVKGETASRQSFQRS---------AKGNVSIHEASPDGKFIVLQNTHR 478
Query: 383 TKELSLGGYSILRNA-GDQETVFKFHRTVKLEPGAVSTVWS 502
K+ ++G + + R G +E V+ R L G +++
Sbjct: 479 AKDEAIGEWKLKRRIDGKRENVYTLPRDFVLRAGKTLKIFA 519
>Z50045-5|CAD44129.1| 575|Caenorhabditis elegans Hypothetical
protein F38B2.1b protein.
Length = 575
Score = 49.6 bits (113), Expect = 1e-06
Identities = 43/161 (26%), Positives = 72/161 (44%), Gaps = 2/161 (1%)
Frame = +2
Query: 26 AQLREYATLMDIKISLDLEIATYRALIEGEEDRLNLTTQSPGREXXXXXXXXXXXXXXXX 205
A + E L+D K +LD EIA YR ++EGEE+R L
Sbjct: 389 ALMVELQMLLDTKQTLDAEIAIYRKMLEGEENRAGLKQ-------------LVEQVVKTH 435
Query: 206 XLTPSRRGTPLRAARKRTLLDESEERSVQDYSVTASAKGDLEVAEACPDGQFVKIRN-NG 382
+T +R + T +S +RS AKG++ + EA PDG+F+ ++N +
Sbjct: 436 AITQETDTETMRVVKGETASRQSFQRS---------AKGNVSIHEASPDGKFIVLQNTHR 486
Query: 383 TKELSLGGYSILRNA-GDQETVFKFHRTVKLEPGAVSTVWS 502
K+ ++G + + R G +E V+ R L G +++
Sbjct: 487 AKDEAIGEWKLKRRIDGKRENVYTLPRDFVLRAGKTLKIFA 527
>Z50045-4|CAA90365.3| 575|Caenorhabditis elegans Hypothetical
protein F38B2.1a protein.
Length = 575
Score = 49.6 bits (113), Expect = 1e-06
Identities = 43/161 (26%), Positives = 72/161 (44%), Gaps = 2/161 (1%)
Frame = +2
Query: 26 AQLREYATLMDIKISLDLEIATYRALIEGEEDRLNLTTQSPGREXXXXXXXXXXXXXXXX 205
A + E L+D K +LD EIA YR ++EGEE+R L
Sbjct: 389 ALMVELQMLLDTKQTLDAEIAIYRKMLEGEENRAGLKQ-------------LVEQVVKTH 435
Query: 206 XLTPSRRGTPLRAARKRTLLDESEERSVQDYSVTASAKGDLEVAEACPDGQFVKIRN-NG 382
+T +R + T +S +RS AKG++ + EA PDG+F+ ++N +
Sbjct: 436 AITQETDTETMRVVKGETASRQSFQRS---------AKGNVSIHEASPDGKFIVLQNTHR 486
Query: 383 TKELSLGGYSILRNA-GDQETVFKFHRTVKLEPGAVSTVWS 502
K+ ++G + + R G +E V+ R L G +++
Sbjct: 487 AKDEAIGEWKLKRRIDGKRENVYTLPRDFVLRAGKTLKIFA 527
>X70830-1|CAA50178.1| 534|Caenorhabditis elegans Cytoplasmic
intermediate filament(IF) protein protein.
Length = 534
Score = 48.0 bits (109), Expect = 4e-06
Identities = 47/160 (29%), Positives = 71/160 (44%), Gaps = 3/160 (1%)
Frame = +2
Query: 11 IRHEAAQL-REYATLMDIKISLDLEIATYRALIEGEEDRLNLTTQSPGREXXXXXXXXXX 187
+R E L E L+D K LD EIA YR ++EGEE R+ L TQ +
Sbjct: 363 MREECQTLVAELQALLDTKQMLDAEIAIYRKMLEGEETRVGL-TQMVEQAVKTHSLQQQE 421
Query: 188 XXXXXXXLTPSRRGTPLRAARKRTLLDESEERSVQDYSVTASAKGDLEVAEACPDGQFVK 367
T S R + K T SAKG++ ++E P+G+F+K
Sbjct: 422 N-------TDSTRSVRGEVSTKTTF--------------QRSAKGNVTISECDPNGKFIK 460
Query: 368 IRN-NGTKELSLGGYSILRNA-GDQETVFKFHRTVKLEPG 481
+ N + K+ ++G + I R G +E V+ V ++PG
Sbjct: 461 LENSHRNKDENVGEHKIRRKLDGRREIVYSIPANVVIKPG 500
>X70834-1|CAA50182.1| 592|Caenorhabditis elegans Cytoplasmic
intermediate filament(IF) protein protein.
Length = 592
Score = 46.4 bits (105), Expect = 1e-05
Identities = 43/161 (26%), Positives = 73/161 (45%), Gaps = 2/161 (1%)
Frame = +2
Query: 26 AQLREYATLMDIKISLDLEIATYRALIEGEEDRLNLTTQSPGREXXXXXXXXXXXXXXXX 205
A + E L+D K +LD EIA YR ++EGEE+R L
Sbjct: 408 ALMVELQMLLDTKQTLDAEIAIYRKMLEGEENRAGL-------------KQLVEQVVKTH 454
Query: 206 XLTPSRRGTPLRAARKRTLLDESEERSVQDYSVTASAKGDLEVAEACPDGQFVKIRN-NG 382
+T + +R + T +S +RS AKG++ + EA PDG+F+ ++N +
Sbjct: 455 AIT--QETETMRVVKGETASRQSFQRS---------AKGNVSIHEASPDGKFIVLQNTHR 503
Query: 383 TKELSLGGYSILRNA-GDQETVFKFHRTVKLEPGAVSTVWS 502
K+ ++G + + R G +E V+ R L G +++
Sbjct: 504 AKDEAIGEWKLKRRIDGKRENVYTLPRDFVLRAGKTLKIFA 544
>X70833-1|CAA50181.1| 575|Caenorhabditis elegans Cytoplasmic
intermediate filament(IF) protein protein.
Length = 575
Score = 45.6 bits (103), Expect = 2e-05
Identities = 39/146 (26%), Positives = 63/146 (43%), Gaps = 1/146 (0%)
Frame = +2
Query: 38 EYATLMDIKISLDLEIATYRALIEGEEDRLNLTTQSPGREXXXXXXXXXXXXXXXXXLTP 217
E L+D K +LD EI YR +++GEE+R L +
Sbjct: 394 ELQMLIDTKQTLDAEIVIYRKMLDGEENRAGLRQ-------------LVEQVVKTTSIHQ 440
Query: 218 SRRGTPLRAARKRTLLDESEERSVQDYSVTASAKGDLEVAEACPDGQFVKIRNNGTKELS 397
++ LR + T S RS AKG++ + EA P G+++ + N ++ +
Sbjct: 441 TKEIESLRVLKGETTSHSSYSRS---------AKGNIAIQEAEPSGKYIVLENISRRDEN 491
Query: 398 LGGYSILRN-AGDQETVFKFHRTVKL 472
+G + + R AG +E VF F R L
Sbjct: 492 IGDWKLRRKIAGKREIVFTFPREFTL 517
>U29379-3|AAF99979.3| 558|Caenorhabditis elegans Intermediate
filament, a protein 4 protein.
Length = 558
Score = 45.6 bits (103), Expect = 2e-05
Identities = 39/146 (26%), Positives = 63/146 (43%), Gaps = 1/146 (0%)
Frame = +2
Query: 38 EYATLMDIKISLDLEIATYRALIEGEEDRLNLTTQSPGREXXXXXXXXXXXXXXXXXLTP 217
E L+D K +LD EI YR +++GEE+R L +
Sbjct: 377 ELQMLIDTKQTLDAEIVIYRKMLDGEENRAGLRQ-------------LVEQVVKTTSIHQ 423
Query: 218 SRRGTPLRAARKRTLLDESEERSVQDYSVTASAKGDLEVAEACPDGQFVKIRNNGTKELS 397
++ LR + T S RS AKG++ + EA P G+++ + N ++ +
Sbjct: 424 TKEIESLRVLKGETTSHSSYSRS---------AKGNIAIQEAEPSGKYIVLENISRRDEN 474
Query: 398 LGGYSILRN-AGDQETVFKFHRTVKL 472
+G + + R AG +E VF F R L
Sbjct: 475 IGDWKLRRKIAGKREIVFTFPREFTL 500
>Z81140-5|CAB03487.4| 581|Caenorhabditis elegans Hypothetical
protein F52E10.5 protein.
Length = 581
Score = 37.9 bits (84), Expect = 0.004
Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Frame = +2
Query: 299 SVTASAKGDLEVAEACPDGQFVKIRN-NGTKELSLGGYSILRNA-GDQETVFKFHRTVKL 472
S SAKG++ + E P+G+FV + N + KE LG + + R G +E VF F L
Sbjct: 460 SYQRSAKGNVSIKEVSPEGKFVILENTHRDKEEPLGDWKLKRKIDGKREIVFTFPSDYIL 519
Query: 473 EP 478
P
Sbjct: 520 HP 521
>Z81140-2|CAB03486.1| 581|Caenorhabditis elegans Hypothetical
protein W10G6.3 protein.
Length = 581
Score = 37.9 bits (84), Expect = 0.004
Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Frame = +2
Query: 299 SVTASAKGDLEVAEACPDGQFVKIRN-NGTKELSLGGYSILRNA-GDQETVFKFHRTVKL 472
S SAKG++ + E P+G+FV + N + KE LG + + R G +E VF F L
Sbjct: 460 SYQRSAKGNVAIKETSPEGKFVILENTHRAKEEPLGDWKLKRKIDGKREIVFTFPSDYIL 519
Query: 473 EP 478
P
Sbjct: 520 HP 521
>Z54282-5|CAA91057.4| 581|Caenorhabditis elegans Hypothetical
protein F52E10.5 protein.
Length = 581
Score = 37.9 bits (84), Expect = 0.004
Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Frame = +2
Query: 299 SVTASAKGDLEVAEACPDGQFVKIRN-NGTKELSLGGYSILRNA-GDQETVFKFHRTVKL 472
S SAKG++ + E P+G+FV + N + KE LG + + R G +E VF F L
Sbjct: 460 SYQRSAKGNVSIKEVSPEGKFVILENTHRDKEEPLGDWKLKRKIDGKREIVFTFPSDYIL 519
Query: 473 EP 478
P
Sbjct: 520 HP 521
>X70835-1|CAA50183.1| 581|Caenorhabditis elegans Cytoplasmic
intermediate filament(IF) protein protein.
Length = 581
Score = 37.9 bits (84), Expect = 0.004
Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Frame = +2
Query: 299 SVTASAKGDLEVAEACPDGQFVKIRN-NGTKELSLGGYSILRNA-GDQETVFKFHRTVKL 472
S SAKG++ + E P+G+FV + N + KE LG + + R G +E VF F L
Sbjct: 460 SYQRSAKGNVAIKETSPEGKFVILENTHRAKEEPLGDWKLKRKIDGKREIVFTFPSDYIL 519
Query: 473 EP 478
P
Sbjct: 520 HP 521
>X70831-1|CAA50179.1| 581|Caenorhabditis elegans Cytoplasmic
intermediate filament(IF) protein protein.
Length = 581
Score = 37.9 bits (84), Expect = 0.004
Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Frame = +2
Query: 299 SVTASAKGDLEVAEACPDGQFVKIRN-NGTKELSLGGYSILRNA-GDQETVFKFHRTVKL 472
S SAKG++ + E P+G+FV + N + KE LG + + R G +E VF F L
Sbjct: 460 SYQRSAKGNVSIKEVSPEGKFVILENTHRDKEEPLGDWKLKRKIDGKREIVFTFPSDYIL 519
Query: 473 EP 478
P
Sbjct: 520 HP 521
>U49831-2|AAK68314.1| 526|Caenorhabditis elegans Intermediate
filament, b protein2, isoform c protein.
Length = 526
Score = 34.3 bits (75), Expect = 0.052
Identities = 16/32 (50%), Positives = 21/32 (65%)
Frame = +2
Query: 32 LREYATLMDIKISLDLEIATYRALIEGEEDRL 127
+ E L++ K +LD EIA YR L+E EE RL
Sbjct: 357 IAELQALLNTKQTLDTEIAIYRKLVESEEGRL 388
>X78553-1|CAA55296.1| 543|Caenorhabditis elegans cytoplasmic
intermediate filamentprotein protein.
Length = 543
Score = 32.7 bits (71), Expect = 0.16
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = +2
Query: 32 LREYATLMDIKISLDLEIATYRALIEGEEDR 124
+ E L++ K +LD EIA YR L+E EE R
Sbjct: 357 IAELQALLNTKQTLDTEIAIYRKLVESEEGR 387
>U49831-1|AAA93405.1| 543|Caenorhabditis elegans Intermediate
filament, b protein2, isoform a protein.
Length = 543
Score = 32.7 bits (71), Expect = 0.16
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = +2
Query: 32 LREYATLMDIKISLDLEIATYRALIEGEEDR 124
+ E L++ K +LD EIA YR L+E EE R
Sbjct: 357 IAELQALLNTKQTLDTEIAIYRKLVESEEGR 387
>Z75547-4|CAA99900.1| 201|Caenorhabditis elegans Hypothetical
protein R11D1.3 protein.
Length = 201
Score = 31.1 bits (67), Expect = 0.49
Identities = 18/57 (31%), Positives = 26/57 (45%)
Frame = +2
Query: 266 DESEERSVQDYSVTASAKGDLEVAEACPDGQFVKIRNNGTKELSLGGYSILRNAGDQ 436
D + Q VT +L V C + QF K NN T L+ G +L N+G++
Sbjct: 23 DTMMDMVTQKLGVTFYTSTELGVIAKCCETQFWKTPNNSTAVLAEGKKCVLNNSGNK 79
>U61953-6|AAO91706.1| 341|Caenorhabditis elegans Hypothetical
protein R08C7.9 protein.
Length = 341
Score = 30.3 bits (65), Expect = 0.85
Identities = 18/49 (36%), Positives = 24/49 (48%)
Frame = +2
Query: 311 SAKGDLEVAEACPDGQFVKIRNNGTKELSLGGYSILRNAGDQETVFKFH 457
SA L+ A P+ +FV IR NG+KE G + R G T+ H
Sbjct: 282 SASLRLDAQMAPPEREFVYIRANGSKEHIRGEIVVRRKDGTMTTIVLNH 330
>Z70311-10|CAA94377.3| 602|Caenorhabditis elegans Hypothetical
protein T25B9.6 protein.
Length = 602
Score = 28.7 bits (61), Expect = 2.6
Identities = 21/61 (34%), Positives = 30/61 (49%)
Frame = -3
Query: 510 VSADQTVETAPGSSFTVRWNLNTVSWSPALRRIEYPPRLSSFVPLFLILTNCPSGQASAT 331
V +D T TAP SSF+ + V ++R +YPP S V L + S ++SA
Sbjct: 67 VKSDNT--TAPPSSFSTYSDGTVVPSVYSVRSFDYPPLSESSVSLNTVSQVTTSTESSAA 124
Query: 330 S 328
S
Sbjct: 125 S 125
>AF016417-1|AAK68335.1| 241|Caenorhabditis elegans Hypothetical
protein F17A9.3 protein.
Length = 241
Score = 27.9 bits (59), Expect = 4.6
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = -2
Query: 466 HSAVELEHRLLVTRIAEDRIPAEAEFLRAIVPNLDELSVGAGFGHLEIPL 317
H A LE ++ R+ D++ AE + LRA++ S+ +PL
Sbjct: 146 HRATSLERENMLLRVELDQLRAETDKLRALILTTPTTSISIPIPLQSLPL 195
>AL132951-9|CAC44304.3| 553|Caenorhabditis elegans Hypothetical
protein Y67H2A.2a protein.
Length = 553
Score = 27.5 bits (58), Expect = 6.0
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Frame = -3
Query: 513 FVSADQTVETAPGSSFTVRW--NLNTVSWSPALRRIEYPPRLSSF 385
+V T E GS F W NL T+ W + E+P L+SF
Sbjct: 55 YVVGGYTTEIKRGSVFRELWAMNLATLEWRRYETKGEFPEALASF 99
>U80846-5|AAP82647.1| 825|Caenorhabditis elegans Hypothetical
protein K06A9.1c protein.
Length = 825
Score = 27.1 bits (57), Expect = 8.0
Identities = 20/55 (36%), Positives = 26/55 (47%)
Frame = +3
Query: 312 APRGISRWPKPAPTDSSSRLGTMARRNSASAGIRSSAMRVTRRRCSSSTAL*SWS 476
AP S + P+ SSS GTM+ NS S G + V+ SST + S S
Sbjct: 181 APGSSSTYGSSTPSASSSSSGTMS-TNSGSTGSTVTVAPVSSSTFGSSTPIASSS 234
>U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical
protein K06A9.1a protein.
Length = 1032
Score = 27.1 bits (57), Expect = 8.0
Identities = 20/55 (36%), Positives = 26/55 (47%)
Frame = +3
Query: 312 APRGISRWPKPAPTDSSSRLGTMARRNSASAGIRSSAMRVTRRRCSSSTAL*SWS 476
AP S + P+ SSS GTM+ NS S G + V+ SST + S S
Sbjct: 388 APGSSSTYGSSTPSASSSSSGTMS-TNSGSTGSTVTVAPVSSSTFGSSTPIASSS 441
>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical
protein K06A9.1b protein.
Length = 2232
Score = 27.1 bits (57), Expect = 8.0
Identities = 20/55 (36%), Positives = 26/55 (47%)
Frame = +3
Query: 312 APRGISRWPKPAPTDSSSRLGTMARRNSASAGIRSSAMRVTRRRCSSSTAL*SWS 476
AP S + P+ SSS GTM+ NS S G + V+ SST + S S
Sbjct: 388 APGSSSTYGSSTPSASSSSSGTMS-TNSGSTGSTVTVAPVSSSTFGSSTPIASSS 441
>U55373-1|AAC25894.1| 1829|Caenorhabditis elegans Lethal protein 418
protein.
Length = 1829
Score = 27.1 bits (57), Expect = 8.0
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Frame = +2
Query: 236 LRAAR--KRTLLDESEERSVQDYSVTASAKGDLEVAEACP 349
L AAR K+ L++ EE DY G+L + + CP
Sbjct: 236 LEAARAAKKAKLEKGEEAENNDYCEECKQDGELLLCDTCP 275
>AF308445-1|AAG29838.1| 1829|Caenorhabditis elegans LET-418 protein.
Length = 1829
Score = 27.1 bits (57), Expect = 8.0
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Frame = +2
Query: 236 LRAAR--KRTLLDESEERSVQDYSVTASAKGDLEVAEACP 349
L AAR K+ L++ EE DY G+L + + CP
Sbjct: 236 LEAARAAKKAKLEKGEEAENNDYCEECKQDGELLLCDTCP 275
>AF039710-10|AAB96693.2| 393|Caenorhabditis elegans Hypothetical
protein C46E10.9 protein.
Length = 393
Score = 27.1 bits (57), Expect = 8.0
Identities = 19/66 (28%), Positives = 29/66 (43%)
Frame = -3
Query: 507 SADQTVETAPGSSFTVRWNLNTVSWSPALRRIEYPPRLSSFVPLFLILTNCPSGQASATS 328
S D T +AP S+ + RW+ TVS S + E + + N P Q + S
Sbjct: 324 STDLT-SSAPASTCSTRWSPMTVSTSESSSTSESSSGMPTLQDPIRRCPNEPVAQCPSRS 382
Query: 327 RSPLAL 310
R P+ +
Sbjct: 383 RKPIQM 388
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,276,634
Number of Sequences: 27780
Number of extensions: 163601
Number of successful extensions: 751
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 751
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -