Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_M16
         (533 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce...   122   4e-29
SPBC2F12.11c |rep2||transcriptional activator Rep2|Schizosacchar...    27   1.3  
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa...    26   4.1  
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar...    26   4.1  
SPAC29A4.10 |rrn5||RNA polymerase I upstream activation factor c...    25   5.4  
SPAC13F5.07c |||previusly annotated as dubious, may not be prote...    25   7.1  
SPBC3B9.09 |vps36||RBZ zinc finger protein Vps36|Schizosaccharom...    25   7.1  
SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch...    25   7.1  
SPAC1851.03 |ckb1||CK2 family regulatory subunit |Schizosaccharo...    25   7.1  
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz...    25   7.1  
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch...    25   9.4  
SPBC530.06c |||translation initiation factor eIF3 alpha subunit ...    25   9.4  
SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch...    25   9.4  
SPBC17A3.06 |||phosphoprotein phosphatase|Schizosaccharomyces po...    25   9.4  
SPCC4G3.07c |phf1|swp1, saf50|PHD finger containing protein Phf1...    25   9.4  
SPBP8B7.28c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   9.4  

>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score =  122 bits (293), Expect = 4e-29
 Identities = 56/90 (62%), Positives = 69/90 (76%)
 Frame = +3

Query: 180 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKT 359
           LF  R ++F IGQDIQP RDLSRFV+WP+YIR+QR++ +L  RLKVPP I QF +TLDK 
Sbjct: 26  LFVSRPRSFGIGQDIQPKRDLSRFVKWPEYIRLQRRRKILNLRLKVPPAIAQFQKTLDKN 85

Query: 360 TAKGLFKILEKYRPETEAVRKERLKTSAXA 449
           TA  +FK+L KYRPET A +K+RL   A A
Sbjct: 86  TATQVFKLLNKYRPETAAEKKQRLVAEAEA 115


>SPBC2F12.11c |rep2||transcriptional activator
           Rep2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 219

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
 Frame = +3

Query: 342 QTLDKTTAKGLF-KILEKYRPETEAVRKERLKTSAXAKLLRKMSRHRKGQTPYALEPTLL 518
           Q + +   KGL  ++L + + + E          A    LR+  R R+G+   AL PT  
Sbjct: 115 QIIHRKQDKGLMARVLSRSKKQEERENHSSDARDAIKSALRRRMRRREGRVQKALRPT-- 172

Query: 519 PSLL 530
           P+L+
Sbjct: 173 PNLI 176


>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
           Par2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 627

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +3

Query: 288 KAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILE 389
           KAVL   LK  P IN F + L     + +F++LE
Sbjct: 463 KAVLTGILKYWPRINSFKELLFLNEIEDIFEVLE 496


>SPBC28E12.03 |rga4||GTPase activating protein
           Rga4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 933

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +1

Query: 301 SVVSKCRRQSTSSPRH*IKPQPKVCSRSWRNTG 399
           S V   R Q+TSSP + ++PQ KV +  +   G
Sbjct: 182 SSVLSGRMQNTSSPTNSLRPQLKVQTNGYETPG 214


>SPAC29A4.10 |rrn5||RNA polymerase I upstream activation factor
           complex subunit Rrn5|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 556

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 12/44 (27%), Positives = 24/44 (54%)
 Frame = -2

Query: 463 FLSNLAFALVFRRSFLTASVSGLYFSKILNRPLAVVLSNVWVNW 332
           +++ L   L + R+ + ASV      K  + P+A+ +S  W++W
Sbjct: 112 YINALENELRWLRNHVDASVRSQCLLKYEDIPIAMEMSQNWIDW 155


>SPAC13F5.07c |||previusly annotated as dubious, may not be protein
           coding|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 105

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +3

Query: 414 VRKERLKTSAXAKLLRKMSRH 476
           V  ++LKTS+  K++RK  RH
Sbjct: 58  VNSQKLKTSSPPKVVRKNKRH 78


>SPBC3B9.09 |vps36||RBZ zinc finger protein
           Vps36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 467

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +3

Query: 369 GLFKILEKYRPETEAVRKERLKTSAXAKLLRK 464
           G  K  E  + ET+ + K+R       K+LRK
Sbjct: 179 GSSKFYEAIKSETDEIEKQRYSNKYDTKVLRK 210


>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
           L3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 12/56 (21%), Positives = 27/56 (48%)
 Frame = +3

Query: 333 QFTQTLDKTTAKGLFKILEKYRPETEAVRKERLKTSAXAKLLRKMSRHRKGQTPYA 500
           +F +   K+  K   K  +KY   T+++ +E  +      ++R ++  +  +TP A
Sbjct: 117 RFYKNWFKSKKKAFTKYAKKYAESTQSINRELERIKKYCSVVRVLAHTQIRKTPLA 172


>SPAC1851.03 |ckb1||CK2 family regulatory subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 231

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 9/13 (69%), Positives = 13/13 (100%)
 Frame = +3

Query: 360 TAKGLFKILEKYR 398
           TA+GL+K+LEKY+
Sbjct: 94  TAQGLYKMLEKYK 106


>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 12/56 (21%), Positives = 27/56 (48%)
 Frame = +3

Query: 333 QFTQTLDKTTAKGLFKILEKYRPETEAVRKERLKTSAXAKLLRKMSRHRKGQTPYA 500
           +F +   K+  K   K  +KY   T+++ +E  +      ++R ++  +  +TP A
Sbjct: 117 RFYKNWFKSKKKAFTKYAKKYAESTQSINRELERIKKYCSVVRVLAHTQIRKTPLA 172


>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 754

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +3

Query: 306 RLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETEAVRKERL 431
           RL +  P+  F     KTTAK L +   + RP+ E +R   L
Sbjct: 455 RLSLNRPVRVFVDN-KKTTAKLLTQEFVRVRPQRELLRPAML 495


>SPBC530.06c |||translation initiation factor eIF3 alpha subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +2

Query: 164 EDCKPSIREENKELCY 211
           E CK  + + NKELCY
Sbjct: 947 EACKACLLQGNKELCY 962


>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 297

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
 Frame = +2

Query: 65  ELKSIQDGXXXXXXXDREKSSGRSTCGEES*A-QEDCKPSIREENKELC 208
           ELKS+ +G       D   S   S C +E  +     KPS   + K+ C
Sbjct: 215 ELKSVNEGSSCCSKKDSSPSEKPSCCSQEKKSCCSSKKPSCCSQEKKGC 263


>SPBC17A3.06 |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 330

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -2

Query: 298 NTAF*RWMRIYFGHRTKRDRSLVGWMSWPIAKF 200
           N  F R +R+YF    + DRSL  +  W   ++
Sbjct: 171 NANFLRQLRVYFECNYQLDRSLRPYRQWLFRRY 203


>SPCC4G3.07c |phf1|swp1, saf50|PHD finger containing protein
           Phf1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 461

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +2

Query: 359 HSQRSVQDLGEIQARN*GSQERASKDEREXQVAKKDEPPPKRP 487
           ++ R+ + LGEI+ +   S ER     +E   AK+DE P   P
Sbjct: 297 YNPRTRELLGEIRHQLLVSSERQQISLQERLHAKQDEAPSDEP 339


>SPBP8B7.28c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 215

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +1

Query: 331 TSSPRH*IKPQPKVCSRSWRNTGQKLRQSGKSV 429
           + + RH + P+ ++C  S RN G    +S K V
Sbjct: 106 SKAQRHVLDPRCQICVHSQRNDGDDNLESDKFV 138


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,060,810
Number of Sequences: 5004
Number of extensions: 38753
Number of successful extensions: 134
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)