Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_M16
(533 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC084159-4|AAK39366.1| 234|Caenorhabditis elegans Hypothetical ... 129 1e-30
AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal pro... 129 1e-30
AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal pro... 122 2e-28
AC084159-5|AAM69075.1| 199|Caenorhabditis elegans Hypothetical ... 98 3e-21
Z81115-4|CAB03294.2| 651|Caenorhabditis elegans Hypothetical pr... 31 0.39
AY818713-1|AAX35669.1| 691|Caenorhabditis elegans LIN-65S protein. 31 0.52
AY818712-1|AAX35668.1| 728|Caenorhabditis elegans LIN-65L protein. 31 0.52
AC025726-22|AAN73851.2| 512|Caenorhabditis elegans Abnormal cel... 31 0.52
AC025726-21|AAK73935.3| 728|Caenorhabditis elegans Abnormal cel... 31 0.52
U28734-1|AAB52603.2| 397|Caenorhabditis elegans Hypothetical pr... 30 0.91
AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nucl... 29 2.1
Z74476-5|CAA98965.1| 325|Caenorhabditis elegans Hypothetical pr... 27 6.4
AC024744-1|AAL00859.1| 685|Caenorhabditis elegans Hypothetical ... 27 6.4
Z34799-3|CAA84316.3| 539|Caenorhabditis elegans Hypothetical pr... 27 8.5
AL033509-1|CAA22059.1| 1494|Caenorhabditis elegans Hypothetical ... 27 8.5
>AC084159-4|AAK39366.1| 234|Caenorhabditis elegans Hypothetical
protein Y73B3A.18a protein.
Length = 234
Score = 129 bits (311), Expect = 1e-30
Identities = 57/95 (60%), Positives = 73/95 (76%)
Frame = +3
Query: 180 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKT 359
LFEKR +NF IGQDIQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF LD
Sbjct: 135 LFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALDSH 194
Query: 360 TAKGLFKILEKYRPETEAVRKERLKTSAXAKLLRK 464
+A+ FK+L+KYRPE+ +K RL+ A A+ K
Sbjct: 195 SARQAFKLLDKYRPESSEAKKNRLRARAEARAAGK 229
>AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform a protein.
Length = 265
Score = 129 bits (311), Expect = 1e-30
Identities = 57/95 (60%), Positives = 73/95 (76%)
Frame = +3
Query: 180 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKT 359
LFEKR +NF IGQDIQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF LD
Sbjct: 32 LFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALDSQ 91
Query: 360 TAKGLFKILEKYRPETEAVRKERLKTSAXAKLLRK 464
+A+ FK+L+KYRPE+ +K RL+ A A+ K
Sbjct: 92 SARQAFKLLDKYRPESTEAKKNRLRARAEARAAGK 126
Score = 38.3 bits (85), Expect = 0.003
Identities = 17/30 (56%), Positives = 21/30 (70%)
Frame = +2
Query: 443 EXQVAKKDEPPPKRPNTLRAGTNTVTKLVE 532
E + A K E KRPNT+R G NT+T+LVE
Sbjct: 120 EARAAGKKEEVTKRPNTVRHGVNTITRLVE 149
>AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform c protein.
Length = 245
Score = 122 bits (294), Expect = 2e-28
Identities = 55/103 (53%), Positives = 72/103 (69%)
Frame = +3
Query: 180 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKT 359
LFEKR +NF IGQDIQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF LD
Sbjct: 32 LFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALDSQ 91
Query: 360 TAKGLFKILEKYRPETEAVRKERLKTSAXAKLLRKMSRHRKGQ 488
+A+ FK+L+KYRPE+ V K + ++ R+ Q
Sbjct: 92 SARQAFKLLDKYRPESTEVTKRPNTVRHGVNTITRLVETRRAQ 134
Score = 33.1 bits (72), Expect = 0.13
Identities = 13/18 (72%), Positives = 16/18 (88%)
Frame = +2
Query: 479 KRPNTLRAGTNTVTKLVE 532
KRPNT+R G NT+T+LVE
Sbjct: 112 KRPNTVRHGVNTITRLVE 129
>AC084159-5|AAM69075.1| 199|Caenorhabditis elegans Hypothetical
protein Y73B3A.18b protein.
Length = 199
Score = 98.3 bits (234), Expect = 3e-21
Identities = 42/58 (72%), Positives = 50/58 (86%)
Frame = +3
Query: 180 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 353
LFEKR +NF IGQDIQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF LD
Sbjct: 135 LFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALD 192
>Z81115-4|CAB03294.2| 651|Caenorhabditis elegans Hypothetical
protein T05D4.4 protein.
Length = 651
Score = 31.5 bits (68), Expect = 0.39
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Frame = +3
Query: 276 IQRQKAVLQRR-LKVPPPINQFTQTLDKT-TAKGLFKILEKYRPETEAVRKERLKTSAXA 449
I+RQK + L VPPP+ Q + + TA IL+ YR ++ E+ K +
Sbjct: 306 IRRQKRDAENEDLVVPPPVPSEIQEREASLTAPESRAILQNYRENLKS--GEKKKRRSRR 363
Query: 450 KLLRKMSRHRK 482
K LR+ RHR+
Sbjct: 364 KKLRRRRRHRQ 374
>AY818713-1|AAX35669.1| 691|Caenorhabditis elegans LIN-65S protein.
Length = 691
Score = 31.1 bits (67), Expect = 0.52
Identities = 22/92 (23%), Positives = 39/92 (42%)
Frame = +2
Query: 110 DREKSSGRSTCGEES*AQEDCKPSIREENKELCYWPGHPANQRSIPFRAMAEIYSHPASK 289
D ++ +T G ES QE+ P A++ S P + E+ P S
Sbjct: 31 DMDEDEDVTTDGPES--QEELAADAPAPGAPEASAPAQEASEASAPDQEAPEVQDVPDSS 88
Query: 290 GCVTASSQSAAANQPVHPDIR*NHSQRSVQDL 385
G AS+Q++ A+ P++ + + QD+
Sbjct: 89 GAPDASAQASEASDASAPEVPGSTEAQDAQDV 120
>AY818712-1|AAX35668.1| 728|Caenorhabditis elegans LIN-65L protein.
Length = 728
Score = 31.1 bits (67), Expect = 0.52
Identities = 22/92 (23%), Positives = 39/92 (42%)
Frame = +2
Query: 110 DREKSSGRSTCGEES*AQEDCKPSIREENKELCYWPGHPANQRSIPFRAMAEIYSHPASK 289
D ++ +T G ES QE+ P A++ S P + E+ P S
Sbjct: 68 DMDEDEDVTTDGPES--QEELAADAPAPGAPEASAPAQEASEASAPDQEAPEVQDVPDSS 125
Query: 290 GCVTASSQSAAANQPVHPDIR*NHSQRSVQDL 385
G AS+Q++ A+ P++ + + QD+
Sbjct: 126 GAPDASAQASEASDASAPEVPGSTEAQDAQDV 157
>AC025726-22|AAN73851.2| 512|Caenorhabditis elegans Abnormal cell
lineage protein 65,isoform b protein.
Length = 512
Score = 31.1 bits (67), Expect = 0.52
Identities = 22/92 (23%), Positives = 39/92 (42%)
Frame = +2
Query: 110 DREKSSGRSTCGEES*AQEDCKPSIREENKELCYWPGHPANQRSIPFRAMAEIYSHPASK 289
D ++ +T G ES QE+ P A++ S P + E+ P S
Sbjct: 68 DMDEDEDVTTDGPES--QEELAADAPAPGAPEASAPAQEASEASAPDQEAPEVQDVPDSS 125
Query: 290 GCVTASSQSAAANQPVHPDIR*NHSQRSVQDL 385
G AS+Q++ A+ P++ + + QD+
Sbjct: 126 GAPDASAQASEASDASAPEVPGSTEAQDAQDV 157
>AC025726-21|AAK73935.3| 728|Caenorhabditis elegans Abnormal cell
lineage protein 65,isoform a protein.
Length = 728
Score = 31.1 bits (67), Expect = 0.52
Identities = 22/92 (23%), Positives = 39/92 (42%)
Frame = +2
Query: 110 DREKSSGRSTCGEES*AQEDCKPSIREENKELCYWPGHPANQRSIPFRAMAEIYSHPASK 289
D ++ +T G ES QE+ P A++ S P + E+ P S
Sbjct: 68 DMDEDEDVTTDGPES--QEELAADAPAPGAPEASAPAQEASEASAPDQEAPEVQDVPDSS 125
Query: 290 GCVTASSQSAAANQPVHPDIR*NHSQRSVQDL 385
G AS+Q++ A+ P++ + + QD+
Sbjct: 126 GAPDASAQASEASDASAPEVPGSTEAQDAQDV 157
>U28734-1|AAB52603.2| 397|Caenorhabditis elegans Hypothetical
protein C53C9.2 protein.
Length = 397
Score = 30.3 bits (65), Expect = 0.91
Identities = 18/83 (21%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Frame = +2
Query: 224 PANQRSI-PFRAMAEIYSHPASKGCVTASSQSAAANQPVHPDIR*NHSQRSVQDLGEIQA 400
P + S+ PF + + S SQS A++PV P+ + + + E A
Sbjct: 306 PGSASSVDPFGHYKKKFEERESSRQSEIDSQSVKASEPVEPEPEEEEEEEEEEKIEEPAA 365
Query: 401 RN*GSQERASKDEREXQVAKKDE 469
+ +E ++E E ++ +++E
Sbjct: 366 KEEEEEEEEEEEEEEEELEEEEE 388
>AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nuclear
anchorage protein1 protein.
Length = 8545
Score = 29.1 bits (62), Expect = 2.1
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +3
Query: 354 KTTAKGLFKILEKYRPETEAVRKERLKTSAXAKLLRK 464
KT AK L + LEK P+ +A+R+E+ + + L K
Sbjct: 7816 KTKAKELLQALEKAIPQEDAIRREQAEINDRLNKLEK 7852
Score = 28.7 bits (61), Expect = 2.8
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +3
Query: 354 KTTAKGLFKILEKYRPETEAVRKERLKTSAXAKLLRK 464
KT AK L + LEK P+ +A+R+E+ + + L K
Sbjct: 3250 KTKAKELLQALEKAIPQEDAIRREQAEINDRLNNLEK 3286
Score = 28.7 bits (61), Expect = 2.8
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +3
Query: 354 KTTAKGLFKILEKYRPETEAVRKERLKTSAXAKLLRK 464
KT AK L + LEK P+ +A+R+E+ + + L K
Sbjct: 4153 KTKAKELLQALEKAIPQEDAIRREQAEINDRLNNLEK 4189
Score = 28.7 bits (61), Expect = 2.8
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +3
Query: 354 KTTAKGLFKILEKYRPETEAVRKERLKTSAXAKLLRK 464
KT AK L + LEK P+ +A+R+E+ + + L K
Sbjct: 5107 KTKAKELLQALEKAIPQEDAIRREQAEINDRLNNLEK 5143
Score = 28.7 bits (61), Expect = 2.8
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +3
Query: 354 KTTAKGLFKILEKYRPETEAVRKERLKTSAXAKLLRK 464
KT AK L + LEK P+ +A+R+E+ + + L K
Sbjct: 6010 KTKAKELLQALEKAIPQEDAIRREQAEINDRLNNLEK 6046
Score = 28.7 bits (61), Expect = 2.8
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +3
Query: 354 KTTAKGLFKILEKYRPETEAVRKERLKTSAXAKLLRK 464
KT AK L + LEK P+ +A+R+E+ + + L K
Sbjct: 6913 KTKAKELLQALEKAIPQEDAIRREQAEINDRLNNLEK 6949
>Z74476-5|CAA98965.1| 325|Caenorhabditis elegans Hypothetical
protein W05B10.5 protein.
Length = 325
Score = 27.5 bits (58), Expect = 6.4
Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Frame = -2
Query: 235 LVGWMSWPIAKF--FVLFSNRGFTIF 164
LVGW +W I F +L SNR F +F
Sbjct: 97 LVGWFAWCIGPFSQVLLTSNRIFAVF 122
>AC024744-1|AAL00859.1| 685|Caenorhabditis elegans Hypothetical
protein Y108G3AL.3 protein.
Length = 685
Score = 27.5 bits (58), Expect = 6.4
Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 6/64 (9%)
Frame = +3
Query: 264 KYIRIQRQKAVLQR---RLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETEAVRKE--- 425
+Y+R QR K + + R+K I Q TA +IL+K + E A+RKE
Sbjct: 615 QYLREQRDKLLQMKNAERIKQMTDIQQNASLERPKTAARAREILDKDKKEAVAIRKEISD 674
Query: 426 RLKT 437
+LKT
Sbjct: 675 KLKT 678
>Z34799-3|CAA84316.3| 539|Caenorhabditis elegans Hypothetical
protein F34D10.6 protein.
Length = 539
Score = 27.1 bits (57), Expect = 8.5
Identities = 21/76 (27%), Positives = 31/76 (40%), Gaps = 6/76 (7%)
Frame = +3
Query: 309 LKVPPPINQFTQTLDKTTAKGLFKILEKYRPETEAVRKERLKTSAXAKLLRKMS------ 470
+K PP Q + + L E+ T+ + KER A K RK S
Sbjct: 238 VKPPPAPPQLLEPATVADSLLLIPNRERRPSRTQLLHKERFHLPAEEKATRKKSTSDNTM 297
Query: 471 RHRKGQTPYALEPTLL 518
R R+ +P +EP +L
Sbjct: 298 RSRESDSPEGIEPDVL 313
>AL033509-1|CAA22059.1| 1494|Caenorhabditis elegans Hypothetical
protein Y113G7C.1 protein.
Length = 1494
Score = 27.1 bits (57), Expect = 8.5
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = +2
Query: 365 QRSVQDLGEIQARN*GSQERASKDEREXQVAKKDE 469
+R+ +D + + R +ERA KD+ + + AK+D+
Sbjct: 1059 ERAKKDKRDAEERRKKDEERAKKDKEDAKKAKEDQ 1093
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,415,746
Number of Sequences: 27780
Number of extensions: 216520
Number of successful extensions: 695
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 661
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 695
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1060113800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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