Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_M13
         (500 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1105.06 |pmc4|med4|RNA polymerase II holoenzyme component Pm...    28   0.91 
SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces pom...    27   1.6  
SPCC13B11.01 |adh1|adh|alcohol dehydrogenase Adh1|Schizosaccharo...    26   2.8  
SPAP8A3.09c |paa1||protein phosphatase regulatory subunit Paa1|S...    26   3.7  
SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces po...    25   6.4  
SPAP7G5.02c |gua2||GMP synthase [glutamine-hydrolyzing] |Schizos...    25   6.4  
SPAC1805.03c |trm13||tRNA 2'-O-methyltransferase Trm13 |Schizosa...    25   6.4  
SPAC14C4.04 |B22918-2||hypothetical protein|Schizosaccharomyces ...    25   8.4  

>SPBC1105.06 |pmc4|med4|RNA polymerase II holoenzyme component Pmc4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 239

 Score = 27.9 bits (59), Expect = 0.91
 Identities = 14/52 (26%), Positives = 25/52 (48%)
 Frame = +2

Query: 38  YQFSVKLVPDLDADNLQTFLQEVRRVAVEEPARDELAVDMANDICPEARITY 193
           +QFS  +VP+L A   Q F ++  +    EP   E  +D    +  + ++ Y
Sbjct: 152 FQFSTSMVPNLSATASQLFSEQPPK--TNEPTETETEIDANKAVEEKTKMNY 201


>SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1188

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +2

Query: 308 LFKLTIHLLIVHEIIHQVILSILKRWCMYM*IYLIYA 418
           +F L I     H II   +L +    CMY+ +  IYA
Sbjct: 170 IFSLVISWFFTHSIIISAVLPLAISSCMYLWMQNIYA 206


>SPCC13B11.01 |adh1|adh|alcohol dehydrogenase
           Adh1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 350

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -2

Query: 277 QELRYECVPVGVPGRPHVLPHTRYT 203
           + +++E VPV  PG+  VL + +YT
Sbjct: 19  ENVKFEEVPVAEPGQDEVLVNIKYT 43


>SPAP8A3.09c |paa1||protein phosphatase regulatory subunit
           Paa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 590

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = +2

Query: 98  QEVRR-VAVEEPARDELAVDMANDICPEARITYLDKCISSVRQHMRSAGYADGHALVPQL 274
           QEVRR +A + P   EL   +   I  E  I  + + I+   QH+R+A   +  AL PQL
Sbjct: 298 QEVRRAIATQIPGFCEL---LDKRIVLEEIIPVIQELINDPAQHVRAALGMNIGALAPQL 354


>SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 878

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +2

Query: 116 AVEEPARDELAVDMANDICPEARITYLDKC 205
           + EE A   L  DMA+++  E+ ++ LD C
Sbjct: 669 SAEEDAELALVYDMADELFSESFLSRLDNC 698


>SPAP7G5.02c |gua2||GMP synthase [glutamine-hydrolyzing]
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 539

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -2

Query: 85  QVVRVEVGDELHAELVPDGRLRL 17
           +V++  +GD  HA +V +G LRL
Sbjct: 254 KVLKEAIGDRFHAIMVDNGLLRL 276


>SPAC1805.03c |trm13||tRNA 2'-O-methyltransferase Trm13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 407

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 8/17 (47%), Positives = 14/17 (82%)
 Frame = +2

Query: 206 ISSVRQHMRSAGYADGH 256
           ++S+R+HM ++G AD H
Sbjct: 332 VNSLREHMHASGGADSH 348


>SPAC14C4.04 |B22918-2||hypothetical protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 267

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 7/31 (22%)
 Frame = -2

Query: 253 PVGVPGRPH-------VLPHTRYTLIQISDP 182
           PVG  GR H       VLP T Y + Q+ DP
Sbjct: 28  PVGRSGRKHRTLKMCIVLPDTGYDVTQVCDP 58


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,777,280
Number of Sequences: 5004
Number of extensions: 33459
Number of successful extensions: 90
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)