Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_M13
         (500 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81474-5|CAB03906.1|  361|Caenorhabditis elegans Hypothetical pr...    27   5.8  
U61948-1|AAB03144.2| 1432|Caenorhabditis elegans Hypothetical pr...    27   7.6  
U41746-1|AAA83330.3|  347|Caenorhabditis elegans Seven tm recept...    27   7.6  

>Z81474-5|CAB03906.1|  361|Caenorhabditis elegans Hypothetical
           protein C18D4.9 protein.
          Length = 361

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
 Frame = +1

Query: 364 IKYFKTMVYVYVDIFNLC---FNRICFIISCKHDFSRRHIYIFPVY 492
           +++F T+   +V IF L    F R  F + C    +  H Y+ P+Y
Sbjct: 111 LRFFVTLQVFHVLIFMLAIQNFLRFFFPLKCSSSLNSIHKYVKPIY 156


>U61948-1|AAB03144.2| 1432|Caenorhabditis elegans Hypothetical protein
            C46A5.4 protein.
          Length = 1432

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 10/37 (27%), Positives = 22/37 (59%)
 Frame = +2

Query: 191  YLDKCISSVRQHMRSAGYADGHALVPQLLQGIRDVFR 301
            Y D+C +++ Q M ++ +  GH+L+  +   + D F+
Sbjct: 1096 YDDQCDATISQEMSTSAFRFGHSLIRGVFTRMNDNFQ 1132


>U41746-1|AAA83330.3|  347|Caenorhabditis elegans Seven tm receptor
           protein 177 protein.
          Length = 347

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = +1

Query: 373 FKTMVYVYVDIFNLCFNR-ICFIISC 447
           F T V V VD+ N  F+R IC I+ C
Sbjct: 71  FTTRVIVIVDVHNSIFSREICSILDC 96


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,928,529
Number of Sequences: 27780
Number of extensions: 196082
Number of successful extensions: 743
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 742
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 956602620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)