Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_M12
         (479 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1347.03 |meu14||sporulation protein Meu14|Schizosaccharomyce...    29   0.36 
SPAC9E9.02 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual         26   2.6  

>SPBC1347.03 |meu14||sporulation protein Meu14|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 335

 Score = 29.1 bits (62), Expect = 0.36
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -2

Query: 301 FSHKYGSELCRECVTSLHFTSRHVTSRYVSHIKSIC 194
           +S KY +++  +CV S+      VTS    H+ S C
Sbjct: 230 YSQKYATQIMHQCVESMARLLAPVTSETTEHVGSDC 265


>SPAC9E9.02 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 98

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = -3

Query: 216 CLI*RVYVLTFH*SE*KLLNAYISIQYILFTDLLFNYVLLVTNKC 82
           CL+ + ++LT         ++ +SIQYI F++ L+  + +  N C
Sbjct: 14  CLLKKNFLLTIR------FSSLVSIQYIPFSNRLYEIISIALNPC 52


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,697,012
Number of Sequences: 5004
Number of extensions: 30132
Number of successful extensions: 55
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 184020746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)