Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_M12
         (479 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_1041 - 21938347-21938529,21938618-21938773,21939291-219394...    30   0.85 
02_04_0490 - 23411742-23412944,23413071-23413595,23413666-234137...    28   4.5  
03_03_0110 - 14523712-14525183,14525482-14525749                       27   7.9  

>04_03_1041 -
           21938347-21938529,21938618-21938773,21939291-21939408,
           21939536-21940203,21941773-21941802
          Length = 384

 Score = 30.3 bits (65), Expect = 0.85
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = -2

Query: 295 HKYGSELCRECVTSLHFTSRHVTSRYVSHIKSICTNIPLI 176
           HK GS     C+T LH T+  +   ++ HI ++CT + ++
Sbjct: 169 HKLGSNY--GCLTKLHLTNVSLHECFMEHITTVCTLLEVL 206


>02_04_0490 -
           23411742-23412944,23413071-23413595,23413666-23413747,
           23413841-23414050,23414371-23414523,23415335-23415447,
           23415476-23415622
          Length = 810

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 22/70 (31%), Positives = 33/70 (47%)
 Frame = -2

Query: 409 EVLHQFFENVKRLVFLLLFKQI*IINRSEQIKTK*KFSHKYGSELCRECVTSLHFTSRHV 230
           EVLH   E +   VF LL  +   ++  EQ+    ++  KYG  + RE    L     HV
Sbjct: 332 EVLHAILEEIGHDVFCLLVDESRDVSCKEQMAVVLRYVDKYG--IVRERFVGL----VHV 385

Query: 229 TSRYVSHIKS 200
           T    +++KS
Sbjct: 386 TETTSAYLKS 395


>03_03_0110 - 14523712-14525183,14525482-14525749
          Length = 579

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -2

Query: 259 TSLHFTSRHVTSRYVSHI 206
           T LH  +RHV +RYV+H+
Sbjct: 456 TVLHAKTRHVLARYVAHL 473


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,334,952
Number of Sequences: 37544
Number of extensions: 142666
Number of successful extensions: 203
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 991020332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)