Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_M12
         (479 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   1.3  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     23   1.3  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          22   3.9  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   9.1  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -2

Query: 268 ECVTSLHFTSRHVTSRYVSHI 206
           E + S  FT+RH  + Y+SH+
Sbjct: 303 ETIISSVFTTRHNATCYLSHV 323


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -2

Query: 268 ECVTSLHFTSRHVTSRYVSHI 206
           E + S  FT+RH  + Y+SH+
Sbjct: 9   ETIISSVFTTRHNATCYLSHV 29


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 21.8 bits (44), Expect = 3.9
 Identities = 8/30 (26%), Positives = 19/30 (63%)
 Frame = -1

Query: 254 TSLHFTSRHVTLRVSYKEYMY*HSINLNEN 165
           TS   + +H+ + V  K+ ++ H+++ NE+
Sbjct: 394 TSTTISQKHIKVFVVNKDILHEHNVDDNED 423


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = +1

Query: 382 HSRRTDVELPMLSHF*WSDIKLIKQTE 462
           +S +TDV + +L HF +  +  I  ++
Sbjct: 151 YSHQTDVWVELLKHFNYMKVIFIHSSD 177


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,243
Number of Sequences: 438
Number of extensions: 1782
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13051674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)