Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_M11
         (553 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29B5.03c |rpl26||60S ribosomal protein L26|Schizosaccharomyc...   129   2e-31
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    27   2.4  
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac...    26   3.2  
SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|ch...    26   3.2  
SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D |Schi...    25   5.6  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   7.4  
SPCC1682.09c |||guanine nucleotide transporter|Schizosaccharomyc...    25   9.8  

>SPBC29B5.03c |rpl26||60S ribosomal protein L26|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 126

 Score =  129 bits (312), Expect = 2e-31
 Identities = 63/122 (51%), Positives = 85/122 (69%)
 Frame = +1

Query: 67  MKYNKLVTSSRRKNRKRHFSAPSHIRRVLMSAPLSKELRQKFNVKSMPTRKDDEVQVVRG 246
           MK+++ VTSSRRK RK HF APS +RRVLMSAPLSKELR+++ ++S+P R+DD++ V+RG
Sbjct: 1   MKFSRDVTSSRRKQRKAHFGAPSSVRRVLMSAPLSKELREQYKIRSLPVRRDDQITVIRG 60

Query: 247 HXXXXXXXXXXXXXXXXFVVYIERIQREKANGASVYVGIHPSKCVIVKFKMNKDRKTILD 426
                            F++ IER+ REKANGAS  VGI  SK VI K  ++KDRK ++ 
Sbjct: 61  -SNKGREGKITSVYRKKFLLLIERVTREKANGASAPVGIDASKVVITKLHLDKDRKDLIV 119

Query: 427 RR 432
           R+
Sbjct: 120 RK 121


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2685

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 15/43 (34%), Positives = 26/43 (60%)
 Frame = +3

Query: 60  GQNEVQ*ARDVVQKEKQEEAFQCPFSHPTSTYVSTTLQRVKTK 188
           G+NE Q +R V + +++EE  +  F H  + Y+S  L+ V+ K
Sbjct: 100 GKNENQRSRLVFKAKREEEKTEEKFCH--AVYMSNLLRNVEQK 140


>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
            Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1373

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +3

Query: 75   Q*ARDVVQKEKQEEAFQCPFSHPTSTYVSTTLQRVKTKVQRE 200
            Q A++  ++ ++EE  +    HP+ TY  TT    K + +RE
Sbjct: 964  QRAKEEERERREEEERENDEDHPSRTYKRTTKSITKRQQRRE 1005


>SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 870

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -2

Query: 264 LLAFIMSSYNLHFVVFAGWHRFHVEL 187
           LLAF  S+ +L  V  +GWH++ V L
Sbjct: 517 LLAFSKSTSDLQVVGKSGWHKYWVVL 542


>SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1107

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = -2

Query: 363  DTDVHTGSIGFLTLDPFDVDYKLLTV 286
            DT ++  SIG LT  P +++ KLLT+
Sbjct: 1051 DTLLYAKSIGLLTFLPNELNQKLLTL 1076


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
 Frame = +3

Query: 129 PFSHPTSTYVSTTLQRVKTKVQR-EIYANPQRRRSAGCTRTL*RPAGGQSSTGVP 290
           P   PTST  ST++    T     +  ++P    S  CT +   P GG SS   P
Sbjct: 193 PTVPPTSTS-STSIPIPPTSTSSTDTNSSPLPTTSTSCTTSTSIPTGGSSSLSTP 246


>SPCC1682.09c |||guanine nucleotide transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 300

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 18/72 (25%), Positives = 27/72 (37%)
 Frame = +3

Query: 3   WRXALELXGSPVAAGIRHEGQNEVQ*ARDVVQKEKQEEAFQCPFSHPTSTYVSTTLQRVK 182
           W  A    GS    G     +  +   +D  Q    +  F        S  VS  L  +K
Sbjct: 177 WTAARNAPGSFALFGGNAFAKEYIFKLKDYSQATFFQNFFTSIAGASASLIVSAPLDVIK 236

Query: 183 TKVQREIYANPQ 218
           T++Q + + NPQ
Sbjct: 237 TRIQNKNFDNPQ 248


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,210,149
Number of Sequences: 5004
Number of extensions: 42940
Number of successful extensions: 129
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)