Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_M11
(553 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0323 - 2459854-2460306 154 5e-38
01_01_0263 + 2136858-2137331 152 2e-37
11_01_0317 - 2365493-2365786,2365825-2365953 121 3e-28
02_05_0117 - 25986555-25987148 30 1.4
05_01_0227 - 1684597-1684727,1685003-1685100,1685176-1685270,168... 28 5.7
10_08_0785 - 20536265-20537032 27 7.5
11_05_0070 + 18818127-18818404,18818492-18818532,18818691-188189... 27 10.0
01_01_0421 + 3181139-3184207 27 10.0
>12_01_0323 - 2459854-2460306
Length = 150
Score = 154 bits (373), Expect = 5e-38
Identities = 81/137 (59%), Positives = 97/137 (70%)
Frame = +1
Query: 67 MKYNKLVTSSRRKNRKRHFSAPSHIRRVLMSAPLSKELRQKFNVKSMPTRKDDEVQVVRG 246
MK N VTSSRRK RK HF+APS +RRVLMSA LS ELR K+NV+S+P RKDDEVQVVRG
Sbjct: 1 MKRNPRVTSSRRKCRKAHFTAPSSVRRVLMSAALSTELRHKYNVRSIPIRKDDEVQVVRG 60
Query: 247 HXXXXXXXXXXXXXXXXFVVYIERIQREKANGASVYVGIHPSKCVIVKFKMNKDRKTILD 426
+V+++ERI REK NG++V VGIHPSK V+ K K++KDRK ILD
Sbjct: 61 -SYKGREGKVVQVYRRRWVIHVERITREKVNGSTVNVGIHPSKVVVTKLKLDKDRKAILD 119
Query: 427 RRASGRLAALGKDNGKY 477
R+ASGR A K GK+
Sbjct: 120 RKASGR--AADKAKGKF 134
>01_01_0263 + 2136858-2137331
Length = 157
Score = 152 bits (369), Expect = 2e-37
Identities = 80/137 (58%), Positives = 96/137 (70%)
Frame = +1
Query: 67 MKYNKLVTSSRRKNRKRHFSAPSHIRRVLMSAPLSKELRQKFNVKSMPTRKDDEVQVVRG 246
MK N VTSSRRK RK HF+APS +RRVLMSA LS ELR K+NV+S+P RKDDEVQVVRG
Sbjct: 1 MKRNPRVTSSRRKCRKAHFTAPSSVRRVLMSAALSSELRHKYNVRSIPIRKDDEVQVVRG 60
Query: 247 HXXXXXXXXXXXXXXXXFVVYIERIQREKANGASVYVGIHPSKCVIVKFKMNKDRKTILD 426
+V+++ERI REK NG++V VGIHPSK V+ K K++KDRK ILD
Sbjct: 61 -SYKGREGKVVQVYRRRWVIHVERITREKVNGSTVNVGIHPSKVVVTKLKLDKDRKAILD 119
Query: 427 RRASGRLAALGKDNGKY 477
R+A GR A K GK+
Sbjct: 120 RKARGR--AADKAKGKF 134
>11_01_0317 - 2365493-2365786,2365825-2365953
Length = 140
Score = 121 bits (292), Expect = 3e-28
Identities = 74/139 (53%), Positives = 89/139 (64%), Gaps = 2/139 (1%)
Frame = +1
Query: 67 MKYNKLVTSSRRKNRKRHFSAPSHIRRVLMSAPLSKELRQKFNVK--SMPTRKDDEVQVV 240
MK N VTSSRRK RK HF+APS +RRVLMSA LS ELR K+NV S R+ VQV
Sbjct: 1 MKRNPRVTSSRRKCRKAHFTAPSSVRRVLMSAALSTELRHKYNVVRGSYKGREGKVVQVY 60
Query: 241 RGHXXXXXXXXXXXXXXXXFVVYIERIQREKANGASVYVGIHPSKCVIVKFKMNKDRKTI 420
R +V+++ERI REK NG++V VGIHPSK V+ K K++KDRK I
Sbjct: 61 RRR----------------WVIHVERITREKVNGSTVNVGIHPSKVVVTKLKLDKDRKAI 104
Query: 421 LDRRASGRLAALGKDNGKY 477
LDR+ASGR A K GK+
Sbjct: 105 LDRKASGR--AADKAKGKF 121
>02_05_0117 - 25986555-25987148
Length = 197
Score = 29.9 bits (64), Expect = 1.4
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -1
Query: 130 GH*NASSCFSFWTTSRAYCTSFCPSCRIPAATGDP 26
GH +C W +RA C P+CR P+ G+P
Sbjct: 167 GHGFHGACVDGWLAARASC----PTCRAPSRAGEP 197
>05_01_0227 -
1684597-1684727,1685003-1685100,1685176-1685270,
1685360-1685545,1686185-1686298,1686583-1686684,
1686811-1687096,1687242-1687291,1687351-1687479,
1687590-1687724,1688163-1688165
Length = 442
Score = 27.9 bits (59), Expect = 5.7
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +3
Query: 72 VQ*ARDVVQKEKQEEAFQCPFSHPTSTYVSTTLQRVKT 185
VQ +RD QK E + Q S S Y+++T++ VKT
Sbjct: 272 VQPSRDAKQKPGPEASIQDLASRAASRYMASTVKSVKT 309
>10_08_0785 - 20536265-20537032
Length = 255
Score = 27.5 bits (58), Expect = 7.5
Identities = 15/42 (35%), Positives = 17/42 (40%)
Frame = -1
Query: 130 GH*NASSCFSFWTTSRAYCTSFCPSCRIPAATGDPXSSRAXR 5
GH +C W S S CPSCR P DP + R
Sbjct: 178 GHGFHVACVDTWLRSN----SSCPSCRRPIVLDDPSPPKRCR 215
>11_05_0070 +
18818127-18818404,18818492-18818532,18818691-18818990,
18820005-18820757,18820840-18820889
Length = 473
Score = 27.1 bits (57), Expect = 10.0
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +3
Query: 30 SPVAAGIRHEGQNEVQ*ARDVVQKEKQEEAFQC 128
+P+A G + + +Q A D ++EK E+ FQC
Sbjct: 188 NPLAEGKSFDSKKHLQIAIDKDEQEKLEKVFQC 220
>01_01_0421 + 3181139-3184207
Length = 1022
Score = 27.1 bits (57), Expect = 10.0
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -3
Query: 413 LRSLFILNFTITHFEGWIP 357
L SL +L + H EGW+P
Sbjct: 294 LSSLSVLQLSFNHLEGWVP 312
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,120,711
Number of Sequences: 37544
Number of extensions: 306954
Number of successful extensions: 842
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 823
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 839
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1245816180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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