Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_M10
         (560 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    26   4.4  
SPBC12C2.08 |dnm1||dynamin Dnm1|Schizosaccharomyces pombe|chr 2|...    26   4.4  
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII...    25   7.6  

>SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 589

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 13/39 (33%), Positives = 24/39 (61%)
 Frame = +2

Query: 149 VFLEKTSKGIKQYNIRPIDPWFISSLDVLADEDMRLLFH 265
           +FLE+ ++ +K+Y  + ++P   +   VL+D  M LL H
Sbjct: 3   LFLEEHAEYLKRYLEQALEPISDADASVLSDYAMALLRH 41


>SPBC12C2.08 |dnm1||dynamin Dnm1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 781

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = -2

Query: 325 VNTKIKDFLVLQSGHGHIIKVKQQTHILVSQD 230
           +NT   DFL +Q     ++  K+Q  +++SQ+
Sbjct: 521 INTNHPDFLGVQGAMAVVLSRKEQNRLMLSQE 552


>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
           complex subunit Taf111|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 979

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 15/61 (24%), Positives = 28/61 (45%)
 Frame = -3

Query: 231 TSKDDMNQGSMGRILYCLMPLLVFSRNTFVD*PKQSKSVMSHGTNNDPSQKMLLTNVRKN 52
           TSK  +N      +L   +P    S+ +F D  +++        +NDP+ +ML  N +  
Sbjct: 320 TSKVVLNLNDPKLLLQPQLPKKEDSQRSFADTHQRNSLAWKFNISNDPAYEMLKQNHQSK 379

Query: 51  I 49
           +
Sbjct: 380 V 380


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,459,108
Number of Sequences: 5004
Number of extensions: 52100
Number of successful extensions: 151
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)