Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_M10
         (560 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0488 - 8824980-8825267,8825364-8827775                           29   2.5  
12_02_0805 - 23329048-23329322,23330049-23330301,23330793-233310...    28   5.9  
07_03_0264 - 15958690-15958910,15959410-15959484,15959547-159597...    27   7.7  
06_03_1298 + 29141578-29141623,29142129-29142250,29143818-291438...    27   7.7  

>03_02_0488 - 8824980-8825267,8825364-8827775
          Length = 899

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 16/54 (29%), Positives = 25/54 (46%)
 Frame = -1

Query: 167 LFSQEIPSSTDPNNPNLSCRMVPTMTRHKKCS*QT*EKI*SLQDSYCTIDTYKP 6
           +FS    SS  P++ +L     PT+  H+ CS +  +    L+D Y     Y P
Sbjct: 156 IFSSPSQSSASPSSKSLESNQSPTLNDHQHCSMEFQQS--DLEDKYHGKARYSP 207


>12_02_0805 -
           23329048-23329322,23330049-23330301,23330793-23331029,
           23332048-23332176,23334205-23334210
          Length = 299

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +2

Query: 365 LNIVGNIVIELGEKSKLFSGTYTAQATS 448
           L+ +GN  I LGE+ KLF+ T  A  T+
Sbjct: 42  LDFIGNGTISLGEQVKLFTKTKEAMITA 69


>07_03_0264 -
           15958690-15958910,15959410-15959484,15959547-15959775,
           15960312-15960587,15962109-15962369,15962632-15962781,
           15963555-15963591,15963958-15964024,15964228-15964291,
           15964643-15964812,15965046-15965124,15965576-15965733,
           15965862-15966030,15966531-15966602,15966977-15967018,
           15967245-15967488,15968782-15968963
          Length = 831

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 17/61 (27%), Positives = 29/61 (47%)
 Frame = -3

Query: 336 LVFVSIRKSKIFWFFNPVTDTLLK*NNKRISSSARTSKDDMNQGSMGRILYCLMPLLVFS 157
           L ++  +++ +  F    TD L+      IS   RT+ + +NQ     +L CL P L  S
Sbjct: 727 LNYLDRQEANMLIFVRAATDLLMPLPTSFISVRVRTAGEVVNQNLRLLVLVCLQPQLHAS 786

Query: 156 R 154
           +
Sbjct: 787 K 787


>06_03_1298 +
           29141578-29141623,29142129-29142250,29143818-29143874,
           29143983-29144138,29144220-29144304,29144575-29144665,
           29144807-29144971,29145064-29145186,29145334-29145409,
           29145513-29145642,29145951-29147824,29148339-29148529,
           29148697-29148860,29149164-29149275,29149276-29149294
          Length = 1136

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = -1

Query: 167 LFSQEIPS-STDPNNPNLSCRMVPTMTRHKKCS*QT*EKI 51
           + ++EIPS ST P+  N +  + P + R+K CS    EK+
Sbjct: 722 VLTEEIPSCSTSPSTANGNHLLQPILGRNKHCSMINTEKV 761


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,995,691
Number of Sequences: 37544
Number of extensions: 297729
Number of successful extensions: 664
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 657
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 664
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1281410928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)