Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_M10
         (560 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U51993-3|AAB36853.2|  958|Caenorhabditis elegans Hypothetical pr...    31   0.57 
Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical pr...    28   5.3  
Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical p...    28   5.3  
AF068710-2|AAC17770.1|  476|Caenorhabditis elegans Hypothetical ...    27   9.2  
AF003385-2|AAB54249.1|  773|Caenorhabditis elegans Hypothetical ...    27   9.2  

>U51993-3|AAB36853.2|  958|Caenorhabditis elegans Hypothetical
           protein F56F10.4 protein.
          Length = 958

 Score = 31.1 bits (67), Expect = 0.57
 Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
 Frame = +2

Query: 29  NMNPVKIIFFLTF-VKSIFCDGSLLVPCDMTDLDCLGQSTKVFLEKTSKGIKQYNIRPID 205
           N   ++ IFF++  +  + CDG L++P  + D    G  TK       K   ++N     
Sbjct: 78  NKARIEHIFFISSNIALVLCDGQLIIPIHIKD----GVITK-------KEELRFNENHKS 126

Query: 206 PWFISSLDVLADEDMRLLFHFNN 274
            W I+ +  L+D+   L+F  NN
Sbjct: 127 KWDITHVQKLSDDTFALVFSMNN 149


>Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical protein
            ZK945.9 protein.
          Length = 3178

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 13/45 (28%), Positives = 20/45 (44%)
 Frame = +2

Query: 368  NIVGNIVIELGEKSKLFSGTYTAQATSVGAAKYGYDLKMDSTGVL 502
            NI  N+  +L         T  A+A + G   Y Y   +D TG++
Sbjct: 1788 NIAKNLANQLASTLDTLENTLAARAIATGNLPYDYSNSVDGTGMV 1832


>Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical
            protein ZK945.9 protein.
          Length = 3178

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 13/45 (28%), Positives = 20/45 (44%)
 Frame = +2

Query: 368  NIVGNIVIELGEKSKLFSGTYTAQATSVGAAKYGYDLKMDSTGVL 502
            NI  N+  +L         T  A+A + G   Y Y   +D TG++
Sbjct: 1788 NIAKNLANQLASTLDTLENTLAARAIATGNLPYDYSNSVDGTGMV 1832


>AF068710-2|AAC17770.1|  476|Caenorhabditis elegans Hypothetical
           protein T06A1.5 protein.
          Length = 476

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 11/26 (42%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
 Frame = -3

Query: 213 NQGSMGR-ILYCLMPLLVFSRNTFVD 139
           N  S+G  +L+C++ + +FSRN+F D
Sbjct: 4   NNASLGVFVLFCILFVYIFSRNSFDD 29


>AF003385-2|AAB54249.1|  773|Caenorhabditis elegans Hypothetical
           protein R08F11.7 protein.
          Length = 773

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 16/48 (33%), Positives = 22/48 (45%)
 Frame = +2

Query: 359 ADLNIVGNIVIELGEKSKLFSGTYTAQATSVGAAKYGYDLKMDSTGVL 502
           AD  IV + +     K   F+G     AT +   KYG D+  D+  VL
Sbjct: 52  ADGAIVSSQIANAESKQLQFTGDVLEIATQILVKKYGVDILEDANEVL 99


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,600,126
Number of Sequences: 27780
Number of extensions: 292121
Number of successful extensions: 727
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 726
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1155524042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)