Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_M09
         (481 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        22   3.9  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   3.9  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       21   6.9  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   9.1  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    21   9.1  

>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 21.8 bits (44), Expect = 3.9
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = +3

Query: 321 SSAASGRTSCRRVSPPTMSTRTKLNTTSTISGFVSYS 431
           SSA  G       SP T S  + L+  +  +  V+Y+
Sbjct: 20  SSANPGTIQACTTSPATASLESSLSAAAVAAAAVNYA 56


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.8 bits (44), Expect = 3.9
 Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
 Frame = +2

Query: 20  RTPVLSSIATDAPRDRG*RTAMFDVFGSVKGLLKLD-TVCIDNNV 151
           R P++ S++   P D G  T      GS+     LD T   D ++
Sbjct: 184 RIPIVRSLSKSPPNDEGIETDSDRRKGSIARCWSLDSTAASDEDI 228


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = -1

Query: 466 VARNVKQDRLKEEYE 422
           VARN K+D LKE  E
Sbjct: 429 VARNKKKDLLKEILE 443


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -3

Query: 464  SEERKTGSLERRVRNKPTDSTC 399
            SEER+  + E      P D+TC
Sbjct: 1069 SEERRQHTAEGVPEQPPHDTTC 1090


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +2

Query: 236 IDCIVDEIPYNVMDTYCWI 292
           +D ++D  P N  +TY +I
Sbjct: 173 VDLVIDVDPNNCDNTYAYI 191


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,542
Number of Sequences: 438
Number of extensions: 2241
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13051674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)