Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_M07
         (347 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo...    27   0.83 
SPAC13D6.01 |pof14||F-box protein Pof14|Schizosaccharomyces pomb...    27   0.83 
SPCC622.19 |jmj4|mug149|Jmj4 protein|Schizosaccharomyces pombe|c...    27   0.83 
SPAC1783.03 |fta2|sma2|Sim4 and Mal2 associated |Schizosaccharom...    25   3.4  
SPAC1142.04 |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa...    24   5.9  
SPAC25A8.02 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    24   5.9  

>SPCC63.04 |mok14||alpha-1,3-glucan synthase
           Mok14|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1369

 Score = 27.1 bits (57), Expect = 0.83
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +3

Query: 42  KIKITRSNFSNRQKKSRQNWFSHSRD*LKRTDNKKFREFN 161
           K  + + N S R KK + +W   S+D L RTD+      N
Sbjct: 202 KYCVIKFNKSGRSKK-KDSWLKRSKDELLRTDSANLLTLN 240


>SPAC13D6.01 |pof14||F-box protein Pof14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 431

 Score = 27.1 bits (57), Expect = 0.83
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -1

Query: 65  VTPRNFYLWKRIKVPRKKNP 6
           ++PRN   WKR+    KKNP
Sbjct: 221 LSPRNVSFWKRLLKVHKKNP 240


>SPCC622.19 |jmj4|mug149|Jmj4 protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 473

 Score = 27.1 bits (57), Expect = 0.83
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -3

Query: 192 DKIPITVFVHD*TPETFYCLFVST 121
           DK+P+   ++D TP+ FY  F++T
Sbjct: 16  DKVPVLQNLNDLTPKDFYDKFIAT 39


>SPAC1783.03 |fta2|sma2|Sim4 and Mal2 associated
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 351

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = +1

Query: 49  KLRGVTSATDKKNHVKIGSAIPEIS*NEQTIKSFGSLIMHKHCDRDFIKY 198
           K + V  + + K HVK+ S+I  I   +   ++    I+H H  +  I+Y
Sbjct: 134 KTKQVMPSAEPKKHVKLNSSISSIRFTQHEFEAESEKIIH-HSLKGDIEY 182


>SPAC1142.04 |||Noc2p-Noc3p complex subunit Noc2 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 707

 Score = 24.2 bits (50), Expect = 5.9
 Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
 Frame = +2

Query: 8   DFFYAEL*FFSKDKNYAE*LQQPTKKI--TSKLVQPFQRLVETN 133
           +F  AE    +K+ +  E L+  + KI  TS  +Q +Q+L+ETN
Sbjct: 149 EFNAAETDAMAKEIDENERLKSSSGKIVLTSDTIQQWQKLLETN 192


>SPAC25A8.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 390

 Score = 24.2 bits (50), Expect = 5.9
 Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
 Frame = +2

Query: 110 FQRLVETNRQ*KVSGV*SCTNTVIGILSNTSCA--RDFVCLKLRRPVS*IVP 259
           F +++E N    +SG+  C  +   +  N  CA    F+C+ L +  S  +P
Sbjct: 223 FSQVMELNASVTISGIPVCIRSKEKMFLNPDCALTLSFICIFLAQYTSIPLP 274


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,441,787
Number of Sequences: 5004
Number of extensions: 26723
Number of successful extensions: 56
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 104153322
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)