Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_M07
         (347 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0305 - 16162063-16162096,16162282-16164365,16165283-161653...    28   1.8  
07_03_1474 - 26766078-26766536,26766634-26766885,26767201-267674...    26   9.3  

>11_04_0305 - 16162063-16162096,16162282-16164365,16165283-16165351,
            16168317-16169288,16169548-16169650,16170427-16170509
          Length = 1114

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = -1

Query: 197  YLIKSLSQCLCMIKLPKLFIVCSFQLISGMA 105
            Y I++L   L  + +  LF+ CSF+L+S +A
Sbjct: 1044 YSIETLPGYLQQVSMRNLFVDCSFELLSSIA 1074


>07_03_1474 -
           26766078-26766536,26766634-26766885,26767201-26767401,
           26767986-26768156,26768249-26768433,26768526-26768851,
           26769430-26770631
          Length = 931

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -3

Query: 333 VRGNLRYH*SDFGNSFTDRKLYYIYGTIYETGRLSFRQ 220
           +RG +R    + G  +T    YY+  T+YE  R  F +
Sbjct: 258 LRGGIRKFTDEVGKLWTSLADYYVRRTLYEKARDVFEE 295


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,185,987
Number of Sequences: 37544
Number of extensions: 140368
Number of successful extensions: 274
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 272
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 274
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 506210712
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)