Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_M07
         (347 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z67755-4|CAA91757.1|  336|Caenorhabditis elegans Hypothetical pr...    28   1.6  
Z78416-4|CAB01678.2|  611|Caenorhabditis elegans Hypothetical pr...    28   2.1  

>Z67755-4|CAA91757.1|  336|Caenorhabditis elegans Hypothetical
           protein F54F7.4 protein.
          Length = 336

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
 Frame = -1

Query: 197 YLIKSLSQCLCMIKLPK-LFIVCSFQLISGMAEPILT*FFLSVAEVTPRNFYLWKRIKVP 21
           YL+  ++  L + K+   + +VC F LI  +    +T   LS+   T RN Y  + + V 
Sbjct: 49  YLVILVASILFVFKMQVWILLVCCFNLIYALHNENVTESMLSLQNYTSRNVY--RPVSVN 106

Query: 20  RKKNP 6
            ++ P
Sbjct: 107 SRRKP 111


>Z78416-4|CAB01678.2|  611|Caenorhabditis elegans Hypothetical
           protein C23H4.4 protein.
          Length = 611

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +1

Query: 49  KLRGVTSATDKKNHVKIGSAIP 114
           K+RG+T  +DK+NH  I   IP
Sbjct: 46  KVRGITDFSDKRNHKYIFKGIP 67


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,707,988
Number of Sequences: 27780
Number of extensions: 143707
Number of successful extensions: 248
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 247
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 248
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 461821634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)