Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_M06
         (476 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC631.01c |acp2||F-actin capping protein beta subunit |Schizos...    48   7e-07
SPBC18H10.15 |ppk23||serine/threonine protein kinase Ppk23|Schiz...    25   4.5  
SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|ch...    25   5.9  
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom...    25   7.9  

>SPAC631.01c |acp2||F-actin capping protein beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 268

 Score = 48.0 bits (109), Expect = 7e-07
 Identities = 19/31 (61%), Positives = 25/31 (80%)
 Frame = +2

Query: 8   EDMENKIRNTLNDIYFGKTKDIVNGLRSVVP 100
           E+ME ++RN L D+YFGKTKDI+N  RS+ P
Sbjct: 218 EEMETRMRNFLQDVYFGKTKDIINQTRSIQP 248


>SPBC18H10.15 |ppk23||serine/threonine protein kinase
           Ppk23|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 398

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 13/39 (33%), Positives = 24/39 (61%)
 Frame = +2

Query: 20  NKIRNTLNDIYFGKTKDIVNGLRSVVPAEVVRRTAALQH 136
           +KIR ++ ++  G   D++N L S+ PA+ +    AL+H
Sbjct: 319 SKIRTSIPNLT-GNAYDLLNRLLSLNPAKRISAKEALEH 356


>SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 867

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -2

Query: 334 QYTINTITKENF*QKKNLIRSLHKHHS*ICLNCNIQYIHLIYTG 203
           QY  + +  ENF   K  +  L+     + ++  I Y+HL YTG
Sbjct: 234 QYPSDIVAYENFVSLKRKLTQLY-----VSIHDLISYVHLNYTG 272


>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 204

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
 Frame = -1

Query: 230 PIYPPHIYRRMWSSELSRRAGRADAAELVLGRAAGLRCVGP-PQPVPLTSAHSQCPSFYQ 54
           P  PP  Y    ++  +  A  + AA      A+  R  G  PQP P    + Q P +Y 
Sbjct: 59  PSGPPPSYSNS-AAPATPAASASSAAPAPAPAASQNRAYGAAPQPYPPQGGYPQQPYYYP 117

Query: 53  NK 48
           N+
Sbjct: 118 NQ 119


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,902,271
Number of Sequences: 5004
Number of extensions: 37653
Number of successful extensions: 70
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 184476110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)