Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_M06
         (476 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_03_0157 + 14947935-14948210,14948448-14948518,14948891-149490...    42   3e-04
04_04_0010 - 22137258-22137428,22137734-22137794,22137917-221379...    29   1.9  
02_04_0104 + 19769744-19769893,19770014-19770252,19771000-197710...    28   3.4  
01_06_0513 - 29944888-29945943                                         28   4.5  

>03_03_0157 +
           14947935-14948210,14948448-14948518,14948891-14949004,
           14949160-14949242,14949329-14949390,14949495-14949614,
           14950398-14950493,14950613-14950696
          Length = 301

 Score = 41.5 bits (93), Expect = 3e-04
 Identities = 19/37 (51%), Positives = 28/37 (75%)
 Frame = +2

Query: 8   EDMENKIRNTLNDIYFGKTKDIVNGLRSVVPAEVVRR 118
           E+ME K+RN+L+ +YFGKT+++V  LR   P EV+ R
Sbjct: 262 EEMEGKLRNSLDQVYFGKTREMVCTLRP--PPEVLNR 296


>04_04_0010 -
           22137258-22137428,22137734-22137794,22137917-22137984,
           22138524-22138733,22138867-22138907,22139011-22139060,
           22139260-22139348,22139468-22139542,22139791-22139882,
           22140131-22140182,22140515-22140631,22141267-22141496,
           22141618-22141672,22141781-22141900
          Length = 476

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 14/26 (53%), Positives = 15/26 (57%)
 Frame = -1

Query: 203 RMWSSELSRRAGRADAAELVLGRAAG 126
           R W+ E  RR GRA A    LG AAG
Sbjct: 439 RKWADEARRRTGRAAAGVGCLGAAAG 464


>02_04_0104 +
           19769744-19769893,19770014-19770252,19771000-19771096,
           19771213-19771362,19771450-19771576,19772543-19772655,
           19772736-19772799,19772898-19772991,19773083-19773191,
           19773982-19774080
          Length = 413

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 8/77 (10%)
 Frame = -2

Query: 214 IYTGVCGAA-----SSVVALDVPTLQNLC*VVLQGCGASDHLSRYH*PQP---IHNVLRF 59
           I+TG   A      + V+    P  +N C  +++  G +DHL+ Y   +P   I+  L F
Sbjct: 6   IFTGAAAATVVVRRAVVIGNGSPGAENQCLGLVRALGLADHLTLYRVTRPQGGINEWLHF 65

Query: 58  TKINIIKCVPNLVLHIF 8
             +++ K +  ++   F
Sbjct: 66  LPVSLHKLIDQVLRQFF 82


>01_06_0513 - 29944888-29945943
          Length = 351

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -1

Query: 230 PIYPPHIYRRMWSSELSRRAGRADAAELVLG 138
           P+ PP + RR  +  + R++   DAAE VLG
Sbjct: 203 PLQPPVVTRRRDTQPVPRQSWGLDAAEYVLG 233


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,608,621
Number of Sequences: 37544
Number of extensions: 230520
Number of successful extensions: 591
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 583
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 591
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 979080328
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)