Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_M06
         (476 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46935-4|CAA87051.1|  270|Caenorhabditis elegans Hypothetical pr...    43   1e-04
Z18854-1|CAA79306.1|  270|Caenorhabditis elegans capping protein...    43   1e-04
Z18806-1|CAA79270.1|  270|Caenorhabditis elegans capping protein...    43   1e-04
U21324-18|AAA62570.2|  419|Caenorhabditis elegans C-type lectin ...    30   0.99 
Z50044-7|CAA90359.1| 1415|Caenorhabditis elegans Hypothetical pr...    27   5.3  
AF035197-1|AAC17865.1| 1415|Caenorhabditis elegans ZYG-9 protein.      27   5.3  
U64836-4|AAG24059.1|  417|Caenorhabditis elegans Hypothetical pr...    27   7.0  
U41556-10|AAM51520.1|  415|Caenorhabditis elegans Hypothetical p...    27   9.2  

>Z46935-4|CAA87051.1|  270|Caenorhabditis elegans Hypothetical
           protein M106.5 protein.
          Length = 270

 Score = 43.2 bits (97), Expect = 1e-04
 Identities = 19/52 (36%), Positives = 31/52 (59%)
 Frame = +2

Query: 8   EDMENKIRNTLNDIYFGKTKDIVNGLRSVVPAEVVRRTAALQHDLAQVLQRR 163
           ED E+K+R T+N+IYFGKTK +++ LRS      + +   +  +L   +  R
Sbjct: 217 EDQESKMRLTINEIYFGKTKKVMSDLRSTEKQSELEKQDEIVRELNNAMANR 268


>Z18854-1|CAA79306.1|  270|Caenorhabditis elegans capping protein
           beta subunit protein.
          Length = 270

 Score = 43.2 bits (97), Expect = 1e-04
 Identities = 19/52 (36%), Positives = 31/52 (59%)
 Frame = +2

Query: 8   EDMENKIRNTLNDIYFGKTKDIVNGLRSVVPAEVVRRTAALQHDLAQVLQRR 163
           ED E+K+R T+N+IYFGKTK +++ LRS      + +   +  +L   +  R
Sbjct: 217 EDQESKMRLTINEIYFGKTKKVMSDLRSTEKQSELEKQDEIVRELNNAMANR 268


>Z18806-1|CAA79270.1|  270|Caenorhabditis elegans capping protein
           beta subunit protein.
          Length = 270

 Score = 43.2 bits (97), Expect = 1e-04
 Identities = 19/52 (36%), Positives = 31/52 (59%)
 Frame = +2

Query: 8   EDMENKIRNTLNDIYFGKTKDIVNGLRSVVPAEVVRRTAALQHDLAQVLQRR 163
           ED E+K+R T+N+IYFGKTK +++ LRS      + +   +  +L   +  R
Sbjct: 217 EDQESKMRLTINEIYFGKTKKVMSDLRSTEKQSELEKQDEIVRELNNAMANR 268


>U21324-18|AAA62570.2|  419|Caenorhabditis elegans C-type lectin
           protein 5 protein.
          Length = 419

 Score = 29.9 bits (64), Expect = 0.99
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -1

Query: 158 AAELVLGRAAGLRCVGPPQPVPLTSAHSQCPSF 60
           A   +  R+AG++C G P PV +T   S  PSF
Sbjct: 277 AVPFICKRSAGIKCSGTPPPVTVTPVPSN-PSF 308


>Z50044-7|CAA90359.1| 1415|Caenorhabditis elegans Hypothetical protein
            F22B5.7 protein.
          Length = 1415

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -1

Query: 182  SRRAGRADAAELVLGRAAGLRCVGPPQPV 96
            SR A R D     +GR  G + + PPQPV
Sbjct: 929  SRYALRDDVFSSAMGRLDGTQVITPPQPV 957


>AF035197-1|AAC17865.1| 1415|Caenorhabditis elegans ZYG-9 protein.
          Length = 1415

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -1

Query: 182  SRRAGRADAAELVLGRAAGLRCVGPPQPV 96
            SR A R D     +GR  G + + PPQPV
Sbjct: 929  SRYALRDDVFSSAMGRLDGTQVITPPQPV 957


>U64836-4|AAG24059.1|  417|Caenorhabditis elegans Hypothetical
           protein F10G2.3 protein.
          Length = 417

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = -1

Query: 173 AGRADAAELVLGRAAGLRCVGPPQPVPLTSAHSQCPSF 60
           A   D    +  R AGL+CVG P  V ++      PSF
Sbjct: 271 ASCTDERNFICKRPAGLQCVGTPPSVTISPIQDN-PSF 307


>U41556-10|AAM51520.1|  415|Caenorhabditis elegans Hypothetical
           protein C25B8.7 protein.
          Length = 415

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 15/41 (36%), Positives = 25/41 (60%)
 Frame = -3

Query: 414 NKFYEDIKYTDYFYQSTIVAALLIICYNTLLTR*QKKTFNK 292
           NK + ++ +T  F    IV++LL+ CY   LT+ ++KT  K
Sbjct: 209 NKIFYEV-FTVVFCVIPIVSSLLVSCYLYDLTKRKRKTVIK 248


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,539,764
Number of Sequences: 27780
Number of extensions: 218060
Number of successful extensions: 572
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 563
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 572
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 871571276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)