Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_M06
         (476 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    29   0.034
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    24   0.73 
DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex det...    24   0.96 
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    22   2.9  
AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    21   6.8  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    21   9.0  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 28.7 bits (61), Expect = 0.034
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -2

Query: 241 NCNIQYIHLIYTGVCGAASSVVALDVPTLQNL 146
           +CN   +  + +GV GAASSV ++ V  L  L
Sbjct: 202 HCNKTAVRKVISGVVGAASSVTSIQVANLLRL 233


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 24.2 bits (50), Expect = 0.73
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -1

Query: 233 HPIYPPHIYRRMWSSE 186
           H I+PP I +R+W  E
Sbjct: 465 HLIFPPDIAKRLWLGE 480


>DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.8 bits (49), Expect = 0.96
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -1

Query: 122 RCVGPPQPVP 93
           RC+GPP P P
Sbjct: 149 RCIGPPTPFP 158


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 12/22 (54%), Positives = 12/22 (54%)
 Frame = -1

Query: 158 AAELVLGRAAGLRCVGPPQPVP 93
           AA    GR AGLR  GP Q  P
Sbjct: 417 AAYNTYGRNAGLRYRGPKQNKP 438


>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 21.0 bits (42), Expect = 6.8
 Identities = 6/18 (33%), Positives = 11/18 (61%)
 Frame = -1

Query: 107 PQPVPLTSAHSQCPSFYQ 54
           P+P+P  +   +C S+ Q
Sbjct: 45  PKPIPSYACRGRCSSYLQ 62


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = +3

Query: 153 CSVGTSSATTELAA 194
           CS+GT+S+T+  A+
Sbjct: 176 CSLGTASSTSSTAS 189


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,383
Number of Sequences: 438
Number of extensions: 2730
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12928545
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)