Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_M05
         (271 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo...    25   2.5  
SPBC646.06c |agn2||glucan endo-1,3-alpha-glucosidase Agn2|Schizo...    24   3.2  
SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ...    24   3.2  
SPBC18H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    23   5.7  
SPCC1682.06 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    23   5.7  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    23   9.9  
SPCC70.04c |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    23   9.9  
SPCC1672.09 |||triglyceride lipase-cholesterol esterase |Schizos...    23   9.9  

>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2244

 Score = 24.6 bits (51), Expect = 2.5
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -2

Query: 81   NITRNYRASYELTSLLSFWPLY 16
            N+T N++ S+EL  L++  P Y
Sbjct: 1914 NMTPNFKPSHELVQLINSSPFY 1935


>SPBC646.06c |agn2||glucan endo-1,3-alpha-glucosidase
           Agn2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 433

 Score = 24.2 bits (50), Expect = 3.2
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -1

Query: 85  KKYNTKLQSVI*THFTS*FLAFVSIGL 5
           KKY   +  +  THFTS   +F S GL
Sbjct: 202 KKYMATVSPIFYTHFTSKNYSFFSEGL 228


>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
           membrane transporter Hmt1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 830

 Score = 24.2 bits (50), Expect = 3.2
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = -2

Query: 234 LNTSVWTECFITSSLILTYYVGLVFFLL*Q*NYFIVFLLLYTM*YNYFMEK 82
           LNT      F    ++L   V +V+F +    YF + +L+ T+ Y Y   K
Sbjct: 374 LNTFAEQVVFQIGPVLLDLGVAMVYFFIKFDIYFTLIVLIMTLCYCYVTVK 424


>SPBC18H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 242

 Score = 23.4 bits (48), Expect = 5.7
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -2

Query: 135 FIVFLLLYTM*YNYFMEKNITRNYRASYELTSLL 34
           FI+ LLLY   YNYF +     N    Y + +++
Sbjct: 84  FILTLLLYHNFYNYFDQALADLNSVVKYVIETIV 117


>SPCC1682.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 238

 Score = 23.4 bits (48), Expect = 5.7
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -2

Query: 135 FIVFLLLYTM*YNYFMEKNITRNYRASYELTSLL 34
           FI+ LLLY   YNYF +     N    Y + +++
Sbjct: 84  FILTLLLYHNFYNYFDQALADLNSVVKYVIETIV 117


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 22.6 bits (46), Expect = 9.9
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -1

Query: 160  FFIITIELFHSI 125
            FF++T+ LFH I
Sbjct: 3458 FFLVTVTLFHGI 3469


>SPCC70.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 244

 Score = 22.6 bits (46), Expect = 9.9
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -2

Query: 222 VWTECFITSSLILTYYV 172
           +W  C I S+L  +YYV
Sbjct: 96  LWGTCVILSTLFWSYYV 112


>SPCC1672.09 |||triglyceride lipase-cholesterol esterase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 467

 Score = 22.6 bits (46), Expect = 9.9
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -1

Query: 169 ISFFFIITIELFHSIPIVIYYVI*LFY 89
           + FFF+I  +L   +  +I+  + LFY
Sbjct: 20  LGFFFVIFEKLLSCLAFMIHNTLGLFY 46


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,010,421
Number of Sequences: 5004
Number of extensions: 15736
Number of successful extensions: 22
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 57602552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)