Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_M05
         (271 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0506 - 19794383-19794670,19795066-19795140,19795337-197987...    27   2.1  
11_06_0410 - 23223701-23223714,23223863-23225159,23225314-232262...    26   4.7  
03_02_0939 + 12571052-12571173,12571219-12571309,12571413-125715...    25   6.3  
01_05_0660 - 24071523-24071780,24071873-24072127,24072209-240723...    25   6.3  
12_01_0120 + 912312-912615,913145-913371,913507-913754,914293-91...    25   8.3  
11_01_0112 + 875447-875490,875854-876359,876750-876976,877112-87...    25   8.3  
11_01_0021 - 143576-143932,144434-144667,144988-145066,145138-14...    25   8.3  

>12_02_0506 -
           19794383-19794670,19795066-19795140,19795337-19798704,
           19799503-19799671,19799758-19799850
          Length = 1330

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = -1

Query: 190 HFDLLRRISFFFIITIELFHSIPIVIYYVI 101
           HF++L + SFF +I  EL H  P   YYV+
Sbjct: 587 HFNILLKKSFFSLIPREL-HPDPSTDYYVM 615


>11_06_0410 -
           23223701-23223714,23223863-23225159,23225314-23226225,
           23226952-23227023,23227323-23227471,23227879-23227912
          Length = 825

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 11/28 (39%), Positives = 20/28 (71%)
 Frame = -2

Query: 87  EKNITRNYRASYELTSLLSFWPLYLLAS 4
           EK +T   + +Y +++ LS++ +YLLAS
Sbjct: 610 EKALTGELQKAYTVSNCLSWYCMYLLAS 637


>03_02_0939 +
           12571052-12571173,12571219-12571309,12571413-12571512,
           12571726-12571807,12571897-12571953,12572632-12572713,
           12572792-12572884,12573984-12574047,12574161-12574246,
           12574329-12574430,12574526-12574609,12574885-12574945,
           12575010-12575091,12575173-12575250,12575867-12575931,
           12576108-12576185,12576278-12576450
          Length = 499

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +2

Query: 191 SDDVIKHSVHTLVFRSLKRSHDMF 262
           ++ V   S+  L  +SLKRSHD+F
Sbjct: 4   AEPVEPQSLKKLSLKSLKRSHDLF 27


>01_05_0660 - 24071523-24071780,24071873-24072127,24072209-24072380,
            24072458-24072685,24072785-24072918,24073005-24073088,
            24073231-24073521,24073599-24073931,24074016-24074266,
            24074354-24074620,24074707-24074867,24074978-24075294,
            24075386-24075667,24075753-24076054,24076147-24076237,
            24076326-24076379,24076497-24076573,24076700-24076859,
            24077129-24077213,24077421-24077630,24077736-24078097
          Length = 1457

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -2

Query: 138  YFIVFLLLYTM*YNYFMEKNITRNYR-ASYELTSLLSFWPLY 16
            +F+VF LLY   Y   M   +T NY  AS   ++  + W L+
Sbjct: 1324 FFMVFTLLYFTFYG-MMAVGLTPNYHIASIVSSAFYAIWNLF 1364


>12_01_0120 +
           912312-912615,913145-913371,913507-913754,914293-914656,
           914758-915154,915671-915693,916645-916987,917513-917532,
           918418-918527,919484-920255
          Length = 935

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -2

Query: 93  FMEKNITRNYRASYELTSLLSFWPLYLLAS 4
           F+  N    Y A +E TS  + W L LLAS
Sbjct: 321 FIVDNCKNIYFAGHETTSTTAAWCLMLLAS 350


>11_01_0112 +
           875447-875490,875854-876359,876750-876976,877112-877237,
           877313-877359,877888-878251,878396-878779
          Length = 565

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -2

Query: 93  FMEKNITRNYRASYELTSLLSFWPLYLLAS 4
           F+  N    Y A +E TS  + W L LLAS
Sbjct: 378 FIVDNCKNIYFAGHETTSTTAAWCLMLLAS 407


>11_01_0021 -
           143576-143932,144434-144667,144988-145066,145138-145253,
           145717-145861,146048-146465,147206-147869
          Length = 670

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 194 DDVIKHSVHTLVFRSLKRSHDMFLSN 271
           D+ + H  HTL+  + K   D FLSN
Sbjct: 93  DNHLLHHFHTLLIHANKPHFDAFLSN 118


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,687,110
Number of Sequences: 37544
Number of extensions: 75618
Number of successful extensions: 116
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 14,793,348
effective HSP length: 68
effective length of database: 12,240,356
effective search space used: 257047476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)