Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_M05
         (271 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC106004-1|AAI06005.1|  514|Homo sapiens pleiotropic regulator 1...    48   7e-06
BC020786-1|AAH20786.1|  505|Homo sapiens PLRG1 protein protein.        48   7e-06
AF044333-1|AAD09407.1|  514|Homo sapiens pleiotropic regulator 1...    48   7e-06

>BC106004-1|AAI06005.1|  514|Homo sapiens pleiotropic regulator 1
           (PRL1 homolog, Arabidopsis) protein.
          Length = 514

 Score = 47.6 bits (108), Expect = 7e-06
 Identities = 20/28 (71%), Positives = 26/28 (92%)
 Frame = +2

Query: 188 MSDDVIKHSVHTLVFRSLKRSHDMFLSN 271
           M ++V KHSVHTLVFRSLKR+HDMF+++
Sbjct: 1   MVEEVQKHSVHTLVFRSLKRTHDMFVAD 28


>BC020786-1|AAH20786.1|  505|Homo sapiens PLRG1 protein protein.
          Length = 505

 Score = 47.6 bits (108), Expect = 7e-06
 Identities = 20/28 (71%), Positives = 26/28 (92%)
 Frame = +2

Query: 188 MSDDVIKHSVHTLVFRSLKRSHDMFLSN 271
           M ++V KHSVHTLVFRSLKR+HDMF+++
Sbjct: 1   MVEEVQKHSVHTLVFRSLKRTHDMFVAD 28


>AF044333-1|AAD09407.1|  514|Homo sapiens pleiotropic regulator 1
           protein.
          Length = 514

 Score = 47.6 bits (108), Expect = 7e-06
 Identities = 20/28 (71%), Positives = 26/28 (92%)
 Frame = +2

Query: 188 MSDDVIKHSVHTLVFRSLKRSHDMFLSN 271
           M ++V KHSVHTLVFRSLKR+HDMF+++
Sbjct: 1   MVEEVQKHSVHTLVFRSLKRTHDMFVAD 28


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,800,672
Number of Sequences: 237096
Number of extensions: 458387
Number of successful extensions: 4187
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4187
length of database: 76,859,062
effective HSP length: 67
effective length of database: 60,973,630
effective search space used: 1341419860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)