Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_M05
         (271 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032648-8|CAI46618.1|  365|Caenorhabditis elegans Hypothetical ...    28   0.79 
U80454-4|AAB37876.3|  896|Caenorhabditis elegans Prion-like-(q/n...    26   4.2  
AF036699-5|AAB88359.1|  290|Caenorhabditis elegans Collagen prot...    26   4.2  
AC006748-6|AAF60516.1|  582|Caenorhabditis elegans Hypothetical ...    26   4.2  
AC006748-5|AAX55685.1|  471|Caenorhabditis elegans Hypothetical ...    26   4.2  
U50135-3|AAA93454.1|  329|Caenorhabditis elegans Squashed vulva ...    25   7.3  
AF038606-6|AAB92023.2|  464|Caenorhabditis elegans Hypothetical ...    25   9.7  

>AL032648-8|CAI46618.1|  365|Caenorhabditis elegans Hypothetical
           protein Y54G9A.10 protein.
          Length = 365

 Score = 28.3 bits (60), Expect = 0.79
 Identities = 18/55 (32%), Positives = 29/55 (52%)
 Frame = -1

Query: 220 VDRMLYNVVAHFDLLRRISFFFIITIELFHSIPIVIYYVI*LFYGKKYNTKLQSV 56
           VD+M   VVA+   L   SFF++I   L  + P ++   + L Y + YN K+  +
Sbjct: 181 VDQMFNLVVAYLFFLFYFSFFYMI---LITAAPNLVAITL-LLYSRHYNLKITRI 231


>U80454-4|AAB37876.3|  896|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 66
           protein.
          Length = 896

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = -2

Query: 141 NYFIVFLLLYTM*YNYFMEKNITRNYRASYELTSLLSFWPL 19
           N+F  F L Y + + Y + +     + +SY+ TS L FW +
Sbjct: 282 NFFQTFRLAYILMFAYMLCRY---PFYSSYDSTSSLGFWEM 319


>AF036699-5|AAB88359.1|  290|Caenorhabditis elegans Collagen protein
           105 protein.
          Length = 290

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -1

Query: 211 MLYNVVAH-FDLLRRISFFFIITIELFHSIPIVIYYV 104
           M + V A+ F     ISF F+  + +  S+P++ YY+
Sbjct: 1   MFFQVKAYRFIAYSAISFSFVAILSVCLSLPMIYYYI 37


>AC006748-6|AAF60516.1|  582|Caenorhabditis elegans Hypothetical
           protein Y39A3B.5a protein.
          Length = 582

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -2

Query: 258 ISWDLFKDLNTSVWTECFITSSLILTY 178
           I+ D F+ LN SVW     T   +LTY
Sbjct: 433 IAGDSFQSLNLSVWNSDINTFITLLTY 459


>AC006748-5|AAX55685.1|  471|Caenorhabditis elegans Hypothetical
           protein Y39A3B.5c protein.
          Length = 471

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -2

Query: 258 ISWDLFKDLNTSVWTECFITSSLILTY 178
           I+ D F+ LN SVW     T   +LTY
Sbjct: 322 IAGDSFQSLNLSVWNSDINTFITLLTY 348


>U50135-3|AAA93454.1|  329|Caenorhabditis elegans Squashed vulva
           protein 7 protein.
          Length = 329

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -2

Query: 270 LDRNISWDLFKDLNTSVWTECFITSSL 190
           LDR  S+ L   + +SVWT CF+ S +
Sbjct: 211 LDRAYSFMLSDSMTSSVWT-CFLLSCI 236


>AF038606-6|AAB92023.2|  464|Caenorhabditis elegans Hypothetical
           protein C04C3.2 protein.
          Length = 464

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = -1

Query: 181 LLRRISFFFIITIELFHSIPIVIY 110
           +  RI FFF+   E+F+ + +V++
Sbjct: 424 IFARIDFFFLFLFEMFNVLILVLF 447


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,413,439
Number of Sequences: 27780
Number of extensions: 84091
Number of successful extensions: 204
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 12,740,198
effective HSP length: 68
effective length of database: 10,851,158
effective search space used: 227874318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)