Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_M04
         (477 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A7KCY9 Cluster: Ribosomal protein L23a; n=1; Heliconius...    41   0.012
UniRef50_UPI00015BE67E Cluster: UPI00015BE67E related cluster; n...    32   5.7  
UniRef50_Q0VQI5 Cluster: Membrane protein, putative; n=5; Bacter...    32   5.7  
UniRef50_UPI00015B567B Cluster: PREDICTED: similar to ribosomal ...    32   7.5  

>UniRef50_A7KCY9 Cluster: Ribosomal protein L23a; n=1; Heliconius
           melpomene|Rep: Ribosomal protein L23a - Heliconius
           melpomene
          Length = 221

 Score = 41.1 bits (92), Expect = 0.012
 Identities = 18/24 (75%), Positives = 20/24 (83%)
 Frame = +2

Query: 404 LVKPVTKALKAQRKVVNGEHGNRV 475
           +VKPV KALK Q+KVV GEHG RV
Sbjct: 148 VVKPVVKALKIQKKVVKGEHGKRV 171


>UniRef50_UPI00015BE67E Cluster: UPI00015BE67E related cluster; n=1;
           unknown|Rep: UPI00015BE67E UniRef100 entry - unknown
          Length = 134

 Score = 32.3 bits (70), Expect = 5.7
 Identities = 16/31 (51%), Positives = 19/31 (61%)
 Frame = -1

Query: 432 LRALVTGFTSCFFCPLMPVFLGLGAIFNFVA 340
           L+ +    T  FFC L  VFLGL  IF+FVA
Sbjct: 104 LKGIAIAVTGLFFC-LFTVFLGLDIIFDFVA 133


>UniRef50_Q0VQI5 Cluster: Membrane protein, putative; n=5;
           Bacteria|Rep: Membrane protein, putative - Alcanivorax
           borkumensis (strain SK2 / ATCC 700651 / DSM 11573)
          Length = 355

 Score = 32.3 bits (70), Expect = 5.7
 Identities = 16/35 (45%), Positives = 21/35 (60%)
 Frame = -1

Query: 468 LPCSPLTTFLCALRALVTGFTSCFFCPLMPVFLGL 364
           +P   LTT + A+ ALVTG  S F  P +PVF  +
Sbjct: 227 IPAMALTTVVLAVVALVTGTLSAFSEPWVPVFTSM 261


>UniRef50_UPI00015B567B Cluster: PREDICTED: similar to ribosomal
           protein L23Ae; n=1; Nasonia vitripennis|Rep: PREDICTED:
           similar to ribosomal protein L23Ae - Nasonia vitripennis
          Length = 247

 Score = 31.9 bits (69), Expect = 7.5
 Identities = 13/22 (59%), Positives = 18/22 (81%)
 Frame = +2

Query: 410 KPVTKALKAQRKVVNGEHGNRV 475
           +PV KALKAQ+K++ G  G+RV
Sbjct: 107 QPVQKALKAQKKILKGVQGSRV 128


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 218,420,234
Number of Sequences: 1657284
Number of extensions: 2610460
Number of successful extensions: 5656
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5656
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 26870548160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)