Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_M04
         (477 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0208 - 13026296-13026654,13027394-13027497,13028109-130282...    31   0.36 

>06_02_0208 -
           13026296-13026654,13027394-13027497,13028109-13028200,
           13028418-13028774,13029932-13030109,13030454-13030507,
           13030701-13030784,13031521-13031714
          Length = 473

 Score = 31.5 bits (68), Expect = 0.36
 Identities = 20/64 (31%), Positives = 24/64 (37%)
 Frame = +1

Query: 28  EIRVGPVETRRKKNYNC*NXXXXXXGCVDICXXXXXXXXXXXXXXXCFN*GCTCFGTSC* 207
           EI+  P  T+RKK+ NC N       C  I                CF  G  C G  C 
Sbjct: 70  EIKSTP-STKRKKHCNCKNSQCLKLACSSILDLFTGQIDQLYGYCECFAAGLYCDGCHCK 128

Query: 208 EKGN 219
           + GN
Sbjct: 129 QCGN 132


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,989,743
Number of Sequences: 37544
Number of extensions: 73531
Number of successful extensions: 146
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 979080328
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)