Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_M04
         (477 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132853-3|CAB60438.1|  859|Caenorhabditis elegans Hypothetical ...    29   1.7  
Z75549-8|CAD60424.1|  297|Caenorhabditis elegans Hypothetical pr...    27   9.2  

>AL132853-3|CAB60438.1|  859|Caenorhabditis elegans Hypothetical
           protein Y80D3A.7 protein.
          Length = 859

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
 Frame = -1

Query: 471 LLPCS--PLTTFLCALRALVTGFTSCFFCPLMPVFLGLGAIFNFVATGLGFEDLAVDAAF 298
           L+ CS  PL  +    RA      +C    L+PV  G+  I    ATGL F+ + V   F
Sbjct: 229 LMVCSLRPLMIYFRYRRAESKPLEACLGA-LIPVLSGITTIGMVSATGLAFQSIIVSTLF 287

Query: 297 L 295
           L
Sbjct: 288 L 288


>Z75549-8|CAD60424.1|  297|Caenorhabditis elegans Hypothetical
           protein T19C4.9 protein.
          Length = 297

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -1

Query: 447 TFLCALRALVTGFTSCFFCPLMPVFLGLG 361
           TF+ A   L  G  +C+ C L P F+ LG
Sbjct: 54  TFIIAFVILRLGSITCYDCLLAPFFMRLG 82


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,139,102
Number of Sequences: 27780
Number of extensions: 69604
Number of successful extensions: 136
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 871571276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)