Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_M02
(591 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_O17445 Cluster: 60S ribosomal protein L15; n=132; Eukar... 268 7e-71
UniRef50_P61313 Cluster: 60S ribosomal protein L15; n=69; Eukary... 246 2e-64
UniRef50_P91374 Cluster: 60S ribosomal protein L15; n=41; Eumeta... 226 3e-58
UniRef50_O58706 Cluster: 50S ribosomal protein L15e; n=40; cellu... 137 2e-31
UniRef50_Q9HSL2 Cluster: 50S ribosomal protein L15e; n=6; Euryar... 124 2e-27
UniRef50_Q4JB20 Cluster: 50S ribosomal protein L15e; n=4; Thermo... 123 3e-27
UniRef50_UPI00015BB1DC Cluster: LSU ribosomal protein L15E; n=1;... 121 1e-26
UniRef50_A3H928 Cluster: Ribosomal protein L15e; n=1; Caldivirga... 115 7e-25
UniRef50_P41961 Cluster: 60S ribosomal protein L15; n=3; Eukaryo... 105 1e-21
UniRef50_Q8ZWD8 Cluster: 50S ribosomal protein L15e; n=4; Pyroba... 86 5e-16
UniRef50_A0RW64 Cluster: Ribosomal protein L15E; n=2; Crenarchae... 76 5e-13
UniRef50_UPI0000DA2AC3 Cluster: PREDICTED: hypothetical protein;... 74 2e-12
UniRef50_A7DNS0 Cluster: Ribosomal protein L15e; n=1; Candidatus... 73 7e-12
UniRef50_A2YC64 Cluster: Ribosomal protein L15; n=6; Eukaryota|R... 71 2e-11
UniRef50_A7PSH3 Cluster: Chromosome chr6 scaffold_28, whole geno... 51 2e-05
UniRef50_O23581 Cluster: Putative uncharacterized protein dl4725... 37 0.31
UniRef50_UPI0000494D88 Cluster: PREDICTED: hypothetical protein ... 35 1.2
UniRef50_A2QMW1 Cluster: Putative uncharacterized protein; n=1; ... 34 2.9
UniRef50_Q8XQP2 Cluster: Probable hemagglutinin/hemolysin-relate... 33 3.8
UniRef50_UPI000023E2D6 Cluster: hypothetical protein FG00419.1; ... 33 6.6
UniRef50_Q8GR93 Cluster: P123; n=1; Mycoplasma mobile|Rep: P123 ... 33 6.6
UniRef50_Q39B45 Cluster: Integral membrane protein-like; n=12; B... 33 6.6
UniRef50_Q0FH07 Cluster: Putative methylase/helicase; n=1; Roseo... 33 6.6
UniRef50_A1IB42 Cluster: Radical SAM; n=1; Candidatus Desulfococ... 33 6.6
UniRef50_UPI0000DA38DA Cluster: PREDICTED: similar to Zinc finge... 32 8.7
UniRef50_Q3W6I7 Cluster: Regulatory protein, TetR; n=2; Frankia|... 32 8.7
>UniRef50_O17445 Cluster: 60S ribosomal protein L15; n=132;
Eukaryota|Rep: 60S ribosomal protein L15 - Drosophila
melanogaster (Fruit fly)
Length = 204
Score = 268 bits (657), Expect = 7e-71
Identities = 125/174 (71%), Positives = 138/174 (79%)
Frame = +2
Query: 68 MGAYRYIQELYRKKLSDVMRFLLRIRVWQYRQLTRMHRAPMPTRPDKARRLGYRAKQGYV 247
MGAYRY+QELYRKK SDVMR+LLRIRVWQYRQLT++HR+P PTRPDKARRLGYRAKQG+V
Sbjct: 1 MGAYRYMQELYRKKQSDVMRYLLRIRVWQYRQLTKLHRSPRPTRPDKARRLGYRAKQGFV 60
Query: 248 IFRIXXXXXXXXXXXXXXATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXNSYW 427
I+RI TYGKPKSHGVNQLKP R LQSIAEE NSYW
Sbjct: 61 IYRIRVRRGGRKRPVPKGCTYGKPKSHGVNQLKPYRGLQSIAEERVGRRLGGLRVLNSYW 120
Query: 428 VAQDSSYKYFEVILLDPSHNAIRRDPKINWIVNAVHKHREMRGLTSAGKSSRGL 589
+AQD+SYKYFEVIL+D H+AIRRDPKINWI VHKHRE+RGLTSAGKSSRG+
Sbjct: 121 IAQDASYKYFEVILIDTHHSAIRRDPKINWICKHVHKHRELRGLTSAGKSSRGI 174
>UniRef50_P61313 Cluster: 60S ribosomal protein L15; n=69;
Eukaryota|Rep: 60S ribosomal protein L15 - Homo sapiens
(Human)
Length = 204
Score = 246 bits (603), Expect = 2e-64
Identities = 115/174 (66%), Positives = 130/174 (74%)
Frame = +2
Query: 68 MGAYRYIQELYRKKLSDVMRFLLRIRVWQYRQLTRMHRAPMPTRPDKARRLGYRAKQGYV 247
MGAY+YIQEL+RKK SDVMRFLLR+R WQYRQL+ +HRAP PTRPDKARRLGY+AKQGYV
Sbjct: 1 MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYV 60
Query: 248 IFRIXXXXXXXXXXXXXXATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXNSYW 427
I+RI ATYGKP HGVNQLK R+LQS+AEE NSYW
Sbjct: 61 IYRIRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYW 120
Query: 428 VAQDSSYKYFEVILLDPSHNAIRRDPKINWIVNAVHKHREMRGLTSAGKSSRGL 589
V +DS+YK+FEVIL+DP H AIRR+P WI VHKHREMRGLTSAG+ SRGL
Sbjct: 121 VGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGL 174
>UniRef50_P91374 Cluster: 60S ribosomal protein L15; n=41;
Eumetazoa|Rep: 60S ribosomal protein L15 -
Caenorhabditis elegans
Length = 204
Score = 226 bits (552), Expect = 3e-58
Identities = 99/174 (56%), Positives = 126/174 (72%)
Frame = +2
Query: 68 MGAYRYIQELYRKKLSDVMRFLLRIRVWQYRQLTRMHRAPMPTRPDKARRLGYRAKQGYV 247
MGAY+Y+QE++RKK SD +R+LLRIR W YRQL+ +HR P PTRP+KARRLGYRAKQG+V
Sbjct: 1 MGAYKYMQEIWRKKQSDALRYLLRIRTWHYRQLSAVHRVPRPTRPEKARRLGYRAKQGFV 60
Query: 248 IFRIXXXXXXXXXXXXXXATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXNSYW 427
++R+ TYGKPK+HGVN+LK ++ Q++AE NSYW
Sbjct: 61 VYRVRVRRGNRKRPVCKGQTYGKPKTHGVNELKNAKSKQAVAEGRAGRRLGSLRVLNSYW 120
Query: 428 VAQDSSYKYFEVILLDPSHNAIRRDPKINWIVNAVHKHREMRGLTSAGKSSRGL 589
VA+DS+YK++EV+L+DP H AIRR+P WI VHKHRE RGLTSAG+ SRGL
Sbjct: 121 VAEDSTYKFYEVVLIDPFHKAIRRNPDTQWITKPVHKHREQRGLTSAGRKSRGL 174
>UniRef50_O58706 Cluster: 50S ribosomal protein L15e; n=40; cellular
organisms|Rep: 50S ribosomal protein L15e - Pyrococcus
horikoshii
Length = 194
Score = 137 bits (332), Expect = 2e-31
Identities = 73/174 (41%), Positives = 96/174 (55%)
Frame = +2
Query: 68 MGAYRYIQELYRKKLSDVMRFLLRIRVWQYRQLTRMHRAPMPTRPDKARRLGYRAKQGYV 247
MG Y+YI+E ++ + LL+ R+ ++R+ + R PTR D+AR LGY+AKQGY+
Sbjct: 1 MGMYKYIREAWKSPKKSYVGQLLKQRMIKWRREPSVVRIERPTRLDRARALGYQAKQGYI 60
Query: 248 IFRIXXXXXXXXXXXXXXATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXNSYW 427
I R+ KP G + P ++LQ IAEE NSYW
Sbjct: 61 IVRVRVRRGGRKRPRWKGGR--KPSKMGQVKYSPKKSLQWIAEEKAARKFPNLEVLNSYW 118
Query: 428 VAQDSSYKYFEVILLDPSHNAIRRDPKINWIVNAVHKHREMRGLTSAGKSSRGL 589
V +D YK+FEVI++DP H I+ DPKI WI HK R RGLTSAGK RGL
Sbjct: 119 VGEDGMYKWFEVIMVDPHHPVIKSDPKIAWIALKHHKGRVFRGLTSAGKKGRGL 172
>UniRef50_Q9HSL2 Cluster: 50S ribosomal protein L15e; n=6;
Euryarchaeota|Rep: 50S ribosomal protein L15e -
Halobacterium salinarium (Halobacterium halobium)
Length = 196
Score = 124 bits (299), Expect = 2e-27
Identities = 68/171 (39%), Positives = 90/171 (52%)
Frame = +2
Query: 77 YRYIQELYRKKLSDVMRFLLRIRVWQYRQLTRMHRAPMPTRPDKARRLGYRAKQGYVIFR 256
Y +I+E + + L R +R+ + R PTR DKAR LGY+AKQG V+ R
Sbjct: 6 YSHIKEAWEDPDDGKLAELQWQRKQDWRKEGAIERVDRPTRLDKARELGYKAKQGVVVVR 65
Query: 257 IXXXXXXXXXXXXXXATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXNSYWVAQ 436
+ + K GVN++ +NLQ IAEE NSYWV +
Sbjct: 66 VSVRKGTARKSRFKAGR--RTKRQGVNRIGRAKNLQRIAEERASRKYVNLRTLNSYWVGE 123
Query: 437 DSSYKYFEVILLDPSHNAIRRDPKINWIVNAVHKHREMRGLTSAGKSSRGL 589
D S K+FE ILLDP H AI+ D +NWI + HK+R RG TSAG+ +RGL
Sbjct: 124 DGSQKWFEAILLDPEHGAIQNDDDLNWICDDSHKNRVFRGKTSAGRRARGL 174
>UniRef50_Q4JB20 Cluster: 50S ribosomal protein L15e; n=4;
Thermoprotei|Rep: 50S ribosomal protein L15e -
Sulfolobus acidocaldarius
Length = 217
Score = 123 bits (297), Expect = 3e-27
Identities = 66/174 (37%), Positives = 100/174 (57%)
Frame = +2
Query: 68 MGAYRYIQELYRKKLSDVMRFLLRIRVWQYRQLTRMHRAPMPTRPDKARRLGYRAKQGYV 247
+ Y YI++ ++ K D R +LR R+ ++R+ + R PTR ++AR LGY+AKQG+V
Sbjct: 3 LSMYHYIEQTWQNK--DWRRSILRKRLIEWRRQPAITRIDRPTRLNRARALGYKAKQGFV 60
Query: 248 IFRIXXXXXXXXXXXXXXATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXNSYW 427
+ R+ +PK GV P++ + IAEE SY+
Sbjct: 61 MVRVRVRRGGLNKPRPNSGR--RPKRMGVYGYGPSKGYRWIAEERAARKFPNLEVLGSYY 118
Query: 428 VAQDSSYKYFEVILLDPSHNAIRRDPKINWIVNAVHKHREMRGLTSAGKSSRGL 589
VA+D YKY+EVI++D SH IR DP++ W+ ++V++ R RGLTSAG+ SRGL
Sbjct: 119 VAEDGMYKYYEVIMVDYSHPVIRSDPELKWLQDSVNRKRVFRGLTSAGQKSRGL 172
>UniRef50_UPI00015BB1DC Cluster: LSU ribosomal protein L15E; n=1;
Ignicoccus hospitalis KIN4/I|Rep: LSU ribosomal protein
L15E - Ignicoccus hospitalis KIN4/I
Length = 245
Score = 121 bits (292), Expect = 1e-26
Identities = 63/173 (36%), Positives = 93/173 (53%)
Frame = +2
Query: 71 GAYRYIQELYRKKLSDVMRFLLRIRVWQYRQLTRMHRAPMPTRPDKARRLGYRAKQGYVI 250
G Y +++E +++ L++ R+ ++R+ + R PTR D+AR LGY+AKQG V+
Sbjct: 24 GLYHFLREQWKRPFDGEHGELMKQRIIKWRREPAVVRIEKPTRLDRARALGYKAKQGVVV 83
Query: 251 FRIXXXXXXXXXXXXXXATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXNSYWV 430
R+ +PK GV P ++ + IAEE NSYWV
Sbjct: 84 VRVRVRKGGLNRPRPNKGR--RPKRMGVYGYAPAKSTRLIAEERAARKYPGLEVLNSYWV 141
Query: 431 AQDSSYKYFEVILLDPSHNAIRRDPKINWIVNAVHKHREMRGLTSAGKSSRGL 589
A+D Y+++EVIL+DP H AI DP++ WI H+ R RG TSAG+ RGL
Sbjct: 142 AEDGEYEWYEVILVDPHHPAICSDPELKWICEKQHRGRVFRGKTSAGRKMRGL 194
>UniRef50_A3H928 Cluster: Ribosomal protein L15e; n=1; Caldivirga
maquilingensis IC-167|Rep: Ribosomal protein L15e -
Caldivirga maquilingensis IC-167
Length = 185
Score = 115 bits (277), Expect = 7e-25
Identities = 61/174 (35%), Positives = 95/174 (54%)
Frame = +2
Query: 68 MGAYRYIQELYRKKLSDVMRFLLRIRVWQYRQLTRMHRAPMPTRPDKARRLGYRAKQGYV 247
MG RY+ ++++K D +R +++ R+ ++R+ + R PTR DKAR+ GY+AKQG V
Sbjct: 1 MGTLRYVADIWKKPYEDPLRQVIKARLIKWRREPAILRVDKPTRIDKARKYGYKAKQGVV 60
Query: 248 IFRIXXXXXXXXXXXXXXATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXNSYW 427
+ R+ T +PK GV + + NLQ +AE+ SYW
Sbjct: 61 VVRVRVRRGPFNRRRPN--TGRRPKRMGVYGVALSTNLQVVAEQRAARRFSNLEVLGSYW 118
Query: 428 VAQDSSYKYFEVILLDPSHNAIRRDPKINWIVNAVHKHREMRGLTSAGKSSRGL 589
V +D+ YK+FEV+++DPSH AIR DP W+V ++RE R + + R L
Sbjct: 119 VGEDAMYKWFEVVMIDPSHPAIRNDPDYAWVVG--KEYREGRRIRRIRERQRKL 170
>UniRef50_P41961 Cluster: 60S ribosomal protein L15; n=3;
Eukaryota|Rep: 60S ribosomal protein L15 - Brugia
pahangi (Filarial nematode worm)
Length = 71
Score = 105 bits (251), Expect = 1e-21
Identities = 44/64 (68%), Positives = 55/64 (85%)
Frame = +2
Query: 68 MGAYRYIQELYRKKLSDVMRFLLRIRVWQYRQLTRMHRAPMPTRPDKARRLGYRAKQGYV 247
MGAYRY+QEL+RKK S+ MR+LLRIR WQYRQLT +HR PTRP+KARRLGY + +GY+
Sbjct: 1 MGAYRYMQELWRKKKSETMRYLLRIRCWQYRQLTAIHRVSRPTRPEKARRLGYLSNEGYI 60
Query: 248 IFRI 259
I+R+
Sbjct: 61 IYRV 64
>UniRef50_Q8ZWD8 Cluster: 50S ribosomal protein L15e; n=4;
Pyrobaculum|Rep: 50S ribosomal protein L15e -
Pyrobaculum aerophilum
Length = 191
Score = 86.2 bits (204), Expect = 5e-16
Identities = 55/170 (32%), Positives = 83/170 (48%), Gaps = 1/170 (0%)
Frame = +2
Query: 74 AYRYIQELYRKKLSDVMRFLLRIRVWQYRQLTRMHRAPMPTRPDKARRLGYRAKQGYVIF 253
AY Y+ YRK +V L+R + ++R+ + R P R ++AR+LGY+AKQG V+
Sbjct: 5 AYSYMAMWYRKIGREVHERLMRKILIEWRKAPAIVRVERPFRLERARKLGYKAKQGVVVV 64
Query: 254 RIXXXXXXXXXXXXXXATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXNSYWVA 433
R+ +PK GV + ++ + +AEE NSYWVA
Sbjct: 65 RVRLMRGPFNRRRPDSGR--RPKRMGVYGITAWKSWRQVAEERAARKHPNLEVLNSYWVA 122
Query: 434 QDSSYKYFEVILLDPSHNAIRRDPKINWIV-NAVHKHREMRGLTSAGKSS 580
D Y+YFEVIL+D + I+ DP + I V + R +R L K +
Sbjct: 123 DDGIYRYFEVILIDCNLPTIKNDPLYSGICGREVPRRRIIRRLRERQKKT 172
>UniRef50_A0RW64 Cluster: Ribosomal protein L15E; n=2;
Crenarchaeota|Rep: Ribosomal protein L15E - Cenarchaeum
symbiosum
Length = 152
Score = 76.2 bits (179), Expect = 5e-13
Identities = 44/132 (33%), Positives = 67/132 (50%)
Frame = +2
Query: 134 LRIRVWQYRQLTRMHRAPMPTRPDKARRLGYRAKQGYVIFRIXXXXXXXXXXXXXXATYG 313
+R RV +R+ + R PTR D+AR LGY+AKQG V+ R+
Sbjct: 20 IRDRVIIWRKQNAVTRIERPTRIDRARSLGYKAKQGIVVVRMRVGTGGMRRQRPRGGR-- 77
Query: 314 KPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXNSYWVAQDSSYKYFEVILLDPSHNAI 493
+PK GV ++K +++ +A SY+V +D +Y +FEVIL DPSH +
Sbjct: 78 RPKHLGVTRIKADVSMKQVAVRRVLERYPNMSLLGSYFVYKDGAYYWFEVILADPSHPRV 137
Query: 494 RRDPKINWIVNA 529
+DP++ V A
Sbjct: 138 AKDPELRDRVGA 149
>UniRef50_UPI0000DA2AC3 Cluster: PREDICTED: hypothetical protein;
n=2; Euarchontoglires|Rep: PREDICTED: hypothetical
protein - Rattus norvegicus
Length = 172
Score = 74.1 bits (174), Expect = 2e-12
Identities = 46/152 (30%), Positives = 79/152 (51%)
Frame = -3
Query: 559 QTAHLAMFVYRIHDPIDLRITANSIVRRIK*NNFKVFV*RVLCYPV*IKHXXXXXXXXXT 380
Q HL++ V DP+ +R++++S + I +N K F+ + PV I+ +
Sbjct: 18 QPTHLSVLVDWFGDPLGVRLSSDSFMEWINEDNLKKFICEIFTNPVGIQDSQSSTMVPSS 77
Query: 379 LLSNRLQVASGFQLVDTMALGFAVGSSLGHWAFTATTAHADSEDNITLLGTVSKPSRLVW 200
LSNRL+ + QLV+T+ A+ +L WAF+ TTA + + TLL VS+PS W
Sbjct: 78 FLSNRLKASGKVQLVNTVVNRLAISCTLRKWAFSTTTADTNPVKDTTLLSLVSQPSLSGW 137
Query: 199 PRGHGSAVHTSQLAILPHSYTQEKSHNIAQLF 104
G G A+++++ +T + H ++ F
Sbjct: 138 -MGWG-ALYSAENWQYCQQWTLRRKHIMSDCF 167
Score = 35.5 bits (78), Expect = 0.94
Identities = 17/40 (42%), Positives = 23/40 (57%)
Frame = -1
Query: 210 ALSGLVGMGARCIRVNWRYCHTLIRKRNRITSLNFFLYNS 91
+LSG +G GA NW+YC +R I S FFL++S
Sbjct: 133 SLSGWMGWGALYSAENWQYCQQWTLRRKHIMSDCFFLHSS 172
>UniRef50_A7DNS0 Cluster: Ribosomal protein L15e; n=1; Candidatus
Nitrosopumilus maritimus SCM1|Rep: Ribosomal protein
L15e - Candidatus Nitrosopumilus maritimus SCM1
Length = 190
Score = 72.5 bits (170), Expect = 7e-12
Identities = 39/126 (30%), Positives = 64/126 (50%)
Frame = +2
Query: 134 LRIRVWQYRQLTRMHRAPMPTRPDKARRLGYRAKQGYVIFRIXXXXXXXXXXXXXXATYG 313
LR RV +R+ + R P+R +ARRLGY+AKQG ++ R+
Sbjct: 59 LRERVVGWRKQNAVTRIDKPSRIQRARRLGYKAKQGVIVVRMRVGTGGMRKQRPTGGR-- 116
Query: 314 KPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXNSYWVAQDSSYKYFEVILLDPSHNAI 493
+PK GV ++K N++++AE SY++ +D + +FEVIL DP H +
Sbjct: 117 RPKHLGVTRIKADDNMKTVAERRVSERYPNMKLLGSYFIYKDGKHYWFEVILADPDHPRV 176
Query: 494 RRDPKI 511
+D ++
Sbjct: 177 AQDKEL 182
>UniRef50_A2YC64 Cluster: Ribosomal protein L15; n=6; Eukaryota|Rep:
Ribosomal protein L15 - Oryza sativa subsp. indica
(Rice)
Length = 438
Score = 70.9 bits (166), Expect = 2e-11
Identities = 34/58 (58%), Positives = 43/58 (74%)
Frame = +2
Query: 68 MGAYRYIQELYRKKLSDVMRFLLRIRVWQYRQLTRMHRAPMPTRPDKARRLGYRAKQG 241
MGAYR + EL+R+K SDVM F+ R+R W +R+ + R PTRPDKARRLG +AKQG
Sbjct: 1 MGAYRCVSELWRRKQSDVMTFVQRVRCWDHRRQPAIGR---PTRPDKARRLGDKAKQG 55
Score = 62.9 bits (146), Expect(2) = 4e-11
Identities = 27/45 (60%), Positives = 34/45 (75%)
Frame = +2
Query: 455 FEVILLDPSHNAIRRDPKINWIVNAVHKHREMRGLTSAGKSSRGL 589
FE+IL+D +H+AIR D +INW+ VHKH E+ GLTSAG RGL
Sbjct: 363 FEIILVDVAHSAIRDDLRINWLCKPVHKHGELHGLTSAGNKYRGL 407
Score = 27.1 bits (57), Expect(2) = 4e-11
Identities = 14/44 (31%), Positives = 17/44 (38%)
Frame = +2
Query: 227 RAKQGYVIFRIXXXXXXXXXXXXXXATYGKPKSHGVNQLKPTRN 358
R+ GYV+ Y KPK G+ QLK RN
Sbjct: 313 RSGTGYVVLPCPSRRGGRKRPVPKGIVYSKPKHQGITQLKFQRN 356
>UniRef50_A7PSH3 Cluster: Chromosome chr6 scaffold_28, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr6 scaffold_28, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 313
Score = 50.8 bits (116), Expect = 2e-05
Identities = 26/67 (38%), Positives = 39/67 (58%)
Frame = +2
Query: 314 KPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXNSYWVAQDSSYKYFEVILLDPSHNAI 493
+P + GV QLK RN + EE + +DS+YKY+E+IL+D +H+AI
Sbjct: 2 EPTNQGVTQLKFHRNKSLVTEERDGRKLAGLK------INEDSTYKYYEIILVDVAHSAI 55
Query: 494 RRDPKIN 514
+ DP+IN
Sbjct: 56 QNDPRIN 62
>UniRef50_O23581 Cluster: Putative uncharacterized protein dl4725w;
n=1; Arabidopsis thaliana|Rep: Putative uncharacterized
protein dl4725w - Arabidopsis thaliana (Mouse-ear cress)
Length = 520
Score = 37.1 bits (82), Expect = 0.31
Identities = 20/55 (36%), Positives = 32/55 (58%)
Frame = -3
Query: 589 ETTRAFPCGRQTAHLAMFVYRIHDPIDLRITANSIVRRIK*NNFKVFV*RVLCYP 425
+TT G +T+ ++ V+R+ DP+D I ++ IV R+ +N V V RVL P
Sbjct: 454 KTTILLSFGGETSEFSVLVHRVADPVDPWIISDGIVCRVYKDNLVVLVGRVLRKP 508
>UniRef50_UPI0000494D88 Cluster: PREDICTED: hypothetical protein
isoform 2; n=1; Pan troglodytes|Rep: PREDICTED:
hypothetical protein isoform 2 - Pan troglodytes
Length = 110
Score = 35.1 bits (77), Expect = 1.2
Identities = 21/73 (28%), Positives = 36/73 (49%)
Frame = -3
Query: 568 CGRQTAHLAMFVYRIHDPIDLRITANSIVRRIK*NNFKVFV*RVLCYPV*IKHXXXXXXX 389
C Q HL + V DP+ +RI+++S + I +N + F+ + PV I+
Sbjct: 36 CRCQPTHLPVLVEWFDDPLGVRISSDSFMEWINEDNLRKFLCGIFTNPVRIQDAQSPMVA 95
Query: 388 XXTLLSNRLQVAS 350
+LL N L+ +S
Sbjct: 96 SSSLLCNGLKASS 108
>UniRef50_A2QMW1 Cluster: Putative uncharacterized protein; n=1;
Aspergillus niger|Rep: Putative uncharacterized protein
- Aspergillus niger
Length = 327
Score = 33.9 bits (74), Expect = 2.9
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = -3
Query: 262 ADSEDNITLLGTVSKPSRLVWPRGHGSAVHTS 167
AD D +TLL + PSR +WP G G +H+S
Sbjct: 267 ADDLDKLTLLQAM--PSRRIWPPGQGRGIHSS 296
>UniRef50_Q8XQP2 Cluster: Probable hemagglutinin/hemolysin-related
protein; n=2; Proteobacteria|Rep: Probable
hemagglutinin/hemolysin-related protein - Ralstonia
solanacearum (Pseudomonas solanacearum)
Length = 4106
Score = 33.5 bits (73), Expect = 3.8
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = -3
Query: 376 LSNRLQVASGFQLVD-TMALGFAVGSSLGHWAFTATTAHADSEDNITLLGT 227
L+ + S ++D T LG + G+W+FT TTA AD ++T T
Sbjct: 1412 LAGTAEANSTISILDGTTLLGTTTADASGNWSFTPTTALADGNHSLTATAT 1462
Score = 33.1 bits (72), Expect = 5.0
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = -3
Query: 376 LSNRLQVASGFQLVD-TMALGFAVGSSLGHWAFTATTAHADSEDNITLLGT 227
L+ + S ++D T LG + G+W FT TTA AD ++T T
Sbjct: 3367 LAGTAEANSTISILDGTTLLGTTTADASGNWTFTPTTALADGSHSLTATAT 3417
Score = 32.7 bits (71), Expect = 6.6
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -3
Query: 325 ALGFAVGSSLGHWAFTATTAHADSEDNITLLGT 227
A+G A + G+W FT TA AD +IT+ T
Sbjct: 305 AIGTATADASGNWTFTPATALADGSHSITVTAT 337
Score = 32.7 bits (71), Expect = 6.6
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -3
Query: 331 TMALGFAVGSSLGHWAFTATTAHADSEDNITLLGT 227
T LG +LG+W FT TTA D ++T T
Sbjct: 1220 TTLLGTTTADALGNWTFTPTTALTDGSHSLTATAT 1254
Score = 32.7 bits (71), Expect = 6.6
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -3
Query: 331 TMALGFAVGSSLGHWAFTATTAHADSEDNITLLGT 227
T LG +LG+W FT TTA D ++T T
Sbjct: 1532 TTLLGTTTADALGNWTFTPTTALTDGSHSLTATAT 1566
Score = 32.3 bits (70), Expect = 8.7
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = -3
Query: 379 LLSNRLQVASGFQLVD-TMALGFAVGSSLGHWAFTATTAHADSEDNITLLGT 227
+L+ + S ++D T LG + G+W FT TTA D +IT T
Sbjct: 3054 VLTGTAEANSTVSILDGTTLLGTTTADASGNWTFTPTTALTDGSHSITATAT 3105
>UniRef50_UPI000023E2D6 Cluster: hypothetical protein FG00419.1;
n=1; Gibberella zeae PH-1|Rep: hypothetical protein
FG00419.1 - Gibberella zeae PH-1
Length = 178
Score = 32.7 bits (71), Expect = 6.6
Identities = 15/29 (51%), Positives = 20/29 (68%)
Frame = -2
Query: 218 AFSPCLASWAWERGAYESTGDIATLLYAR 132
AF LA+W WERG +ES D+ T++ AR
Sbjct: 114 AFMFALAAWIWERGVFESARDM-TVIGAR 141
>UniRef50_Q8GR93 Cluster: P123; n=1; Mycoplasma mobile|Rep: P123 -
Mycoplasma mobile
Length = 1128
Score = 32.7 bits (71), Expect = 6.6
Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 8/85 (9%)
Frame = -3
Query: 349 GFQLVDTMALG--FAVGS-SLGHWAFTATTAHADSEDNITLLGTVSKPSRLVWP-----R 194
GF L ++ +G AVG+ ++G ATT A+SE++ T+ K RL+
Sbjct: 2 GFSLKKSLIIGPIIAVGAIAIGVPVIVATTFRANSEESSTISVEEVKNDRLISNINASYV 61
Query: 193 GHGSAVHTSQLAILPHSYTQEKSHN 119
G+ SAV TS L I +++T KS N
Sbjct: 62 GNASAVTTSNLVI--NNFTLNKSKN 84
>UniRef50_Q39B45 Cluster: Integral membrane protein-like; n=12;
Betaproteobacteria|Rep: Integral membrane protein-like -
Burkholderia sp. (strain 383) (Burkholderia cepacia
(strain ATCC 17760/ NCIB 9086 / R18194))
Length = 156
Score = 32.7 bits (71), Expect = 6.6
Identities = 21/53 (39%), Positives = 23/53 (43%), Gaps = 6/53 (11%)
Frame = +1
Query: 262 RAPWWP*TPS-----AQGSYLRQTQE-PWCQPTETHSQPAVYC*GACWSPVWW 402
RA WW TP+ A G +L T PW P S GACW PV W
Sbjct: 50 RADWWFTTPAVIFQPASGLWLAHTAGWPWDTPWLVASIVLYAIAGACWLPVVW 102
>UniRef50_Q0FH07 Cluster: Putative methylase/helicase; n=1;
Roseovarius sp. HTCC2601|Rep: Putative
methylase/helicase - Roseovarius sp. HTCC2601
Length = 1127
Score = 32.7 bits (71), Expect = 6.6
Identities = 16/39 (41%), Positives = 20/39 (51%)
Frame = -3
Query: 379 LLSNRLQVASGFQLVDTMALGFAVGSSLGHWAFTATTAH 263
L+S ++A G +LV M GF G HWA A AH
Sbjct: 216 LISAAKRLAPGGRLVAIMPTGFTPGRDAAHWARAAAIAH 254
>UniRef50_A1IB42 Cluster: Radical SAM; n=1; Candidatus Desulfococcus
oleovorans Hxd3|Rep: Radical SAM - Candidatus
Desulfococcus oleovorans Hxd3
Length = 817
Score = 32.7 bits (71), Expect = 6.6
Identities = 19/69 (27%), Positives = 33/69 (47%)
Frame = -3
Query: 343 QLVDTMALGFAVGSSLGHWAFTATTAHADSEDNITLLGTVSKPSRLVWPRGHGSAVHTSQ 164
++V T++ F +G +L F D ++ VS+ +R+ P G G +H S
Sbjct: 388 EIVHTVSDAFGLGWNLIKTYFMVGLPTETDADIDGIVSLVSRLARIKAPGGRGKKLHVSV 447
Query: 163 LAILPHSYT 137
A +P S+T
Sbjct: 448 AAFIPKSHT 456
>UniRef50_UPI0000DA38DA Cluster: PREDICTED: similar to Zinc finger
protein 500; n=1; Rattus norvegicus|Rep: PREDICTED:
similar to Zinc finger protein 500 - Rattus norvegicus
Length = 637
Score = 32.3 bits (70), Expect = 8.7
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = +1
Query: 244 CYLQNPRAPWWP*TPSAQGSYLRQTQEPWCQPTETHSQPAV 366
C L + R PW T +A G LR+ P ETH+ P +
Sbjct: 5 CSLSDNRPPWRTDTRTAPGDALRRALRPASADPETHAGPTI 45
>UniRef50_Q3W6I7 Cluster: Regulatory protein, TetR; n=2;
Frankia|Rep: Regulatory protein, TetR - Frankia sp.
EAN1pec
Length = 195
Score = 32.3 bits (70), Expect = 8.7
Identities = 17/43 (39%), Positives = 24/43 (55%)
Frame = +3
Query: 174 CTALPCPRGQTRREGLDTVPSKVMLSSESACAVVAVNAQCPRE 302
CT LP +T EG+ T P+ V L++E+ + AV Q RE
Sbjct: 90 CTTLPLALIKTLAEGVVTAPTVVSLTAEADTLLAAVVEQAQRE 132
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 593,355,187
Number of Sequences: 1657284
Number of extensions: 11602256
Number of successful extensions: 32424
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 31420
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32411
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 41073165837
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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