Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_M02
(591 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0228 - 22137771-22138016,22138109-22138306,22138852-221390... 214 5e-56
05_03_0257 + 11145558-11145876,11148181-11148347,11149114-111493... 212 2e-55
06_02_0082 + 11536799-11537554,11538210-11538334,11538507-11538687 31 0.005
04_03_0563 - 17195605-17196681 29 2.8
01_06_1684 + 39151412-39151702,39152410-39152548,39152926-391530... 29 2.8
10_02_0040 + 4482853-4482988,4483111-4483224,4485372-4485514 29 3.7
03_02_0370 + 7853646-7853772,7854508-7854621,7855152-7855294 29 3.7
02_05_0460 - 29224525-29224620,29225525-29226625 28 4.8
01_06_1201 - 35380338-35380496,35381200-35381322,35381521-353820... 28 4.8
01_01_1084 - 8521796-8522389,8522503-8522983,8523084-8523190 28 6.4
07_01_0763 + 5854986-5855000,5855266-5855775,5855899-5856159 27 8.5
07_01_0760 - 5844349-5844401,5844521-5844665,5844782-5845297,584... 27 8.5
>03_05_0228 -
22137771-22138016,22138109-22138306,22138852-22139018,
22139129-22139132
Length = 204
Score = 214 bits (522), Expect = 5e-56
Identities = 97/174 (55%), Positives = 121/174 (69%)
Frame = +2
Query: 68 MGAYRYIQELYRKKLSDVMRFLLRIRVWQYRQLTRMHRAPMPTRPDKARRLGYRAKQGYV 247
MGAY+Y+ EL+R+K SDVMRF+ R+R W+YRQ + R PTRPDKARRLGY+AKQGYV
Sbjct: 1 MGAYKYVSELWRRKQSDVMRFVQRVRCWEYRQQPAIVRLTRPTRPDKARRLGYKAKQGYV 60
Query: 248 IFRIXXXXXXXXXXXXXXATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXNSYW 427
++R+ YGKPK G+ QLK RN +S+AEE NSYW
Sbjct: 61 VYRVRVRRGGRKRPVPKGIVYGKPKHQGITQLKFQRNKRSVAEERAGRKLGGLRVLNSYW 120
Query: 428 VAQDSSYKYFEVILLDPSHNAIRRDPKINWIVNAVHKHREMRGLTSAGKSSRGL 589
V +DS+YKYFE+IL+D +H+AIR DP+INW+ VHKHRE+RGLTSAGK RGL
Sbjct: 121 VNEDSTYKYFEIILVDVAHSAIRNDPRINWLCKPVHKHRELRGLTSAGKKYRGL 174
>05_03_0257 +
11145558-11145876,11148181-11148347,11149114-11149311,
11149405-11149650
Length = 309
Score = 212 bits (517), Expect = 2e-55
Identities = 96/173 (55%), Positives = 120/173 (69%)
Frame = +2
Query: 71 GAYRYIQELYRKKLSDVMRFLLRIRVWQYRQLTRMHRAPMPTRPDKARRLGYRAKQGYVI 250
GAY+Y+ EL+R+K SDVMRF+ R+R W+YRQ + R PTRPDKARRLGY+AKQGYV+
Sbjct: 107 GAYKYVSELWRRKQSDVMRFVQRVRCWEYRQQPAIVRLTRPTRPDKARRLGYKAKQGYVV 166
Query: 251 FRIXXXXXXXXXXXXXXATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXNSYWV 430
+R+ YGKPK G+ QLK RN +S+AEE NSYWV
Sbjct: 167 YRVRVRRGGRKRPVPKGIVYGKPKHQGITQLKFQRNKRSVAEERAGRKLGGLRVLNSYWV 226
Query: 431 AQDSSYKYFEVILLDPSHNAIRRDPKINWIVNAVHKHREMRGLTSAGKSSRGL 589
+DS+YKYFE+IL+D +H+AIR DP+INW+ VHKHRE+RGLTSAGK RGL
Sbjct: 227 NEDSTYKYFEIILVDVAHSAIRNDPRINWLCKPVHKHRELRGLTSAGKKYRGL 279
>06_02_0082 + 11536799-11537554,11538210-11538334,11538507-11538687
Length = 353
Score = 30.7 bits (66), Expect(2) = 0.005
Identities = 12/18 (66%), Positives = 16/18 (88%)
Frame = +2
Query: 455 FEVILLDPSHNAIRRDPK 508
FE+IL+D +H+AIR DPK
Sbjct: 299 FEIILVDVAHSAIRDDPK 316
Score = 26.6 bits (56), Expect(2) = 0.005
Identities = 14/44 (31%), Positives = 17/44 (38%)
Frame = +2
Query: 227 RAKQGYVIFRIXXXXXXXXXXXXXXATYGKPKSHGVNQLKPTRN 358
R+ GYV+ Y KPK G+ QLK RN
Sbjct: 249 RSGTGYVVLPCPSRRGGRKRPVHKGIVYSKPKHQGITQLKFQRN 292
>04_03_0563 - 17195605-17196681
Length = 358
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +3
Query: 171 VCTALPCPRGQTRREGLDTVPSKVMLSSESACAVVAV 281
V ALP PR T+P+ V++ S S C +V V
Sbjct: 147 VVEALPSPRIMAVHMPFSTLPASVVVDSSSGCKIVYV 183
>01_06_1684 +
39151412-39151702,39152410-39152548,39152926-39153040,
39153232-39153332,39153688-39153809,39153885-39153976,
39155288-39155393,39155477-39155631,39155904-39156031,
39156349-39156479,39157171-39157268,39157371-39158162,
39158472-39158523
Length = 773
Score = 29.1 bits (62), Expect = 2.8
Identities = 18/54 (33%), Positives = 26/54 (48%)
Frame = -3
Query: 355 ASGFQLVDTMALGFAVGSSLGHWAFTATTAHADSEDNITLLGTVSKPSRLVWPR 194
AS +LV + GFA G++ A A AH DS+ ++ L + L W R
Sbjct: 55 ASAARLVASAVAGFAQGAAAAAIAAGAIGAHVDSDRDLRHLSRLRYKRWLWWTR 108
>10_02_0040 + 4482853-4482988,4483111-4483224,4485372-4485514
Length = 130
Score = 28.7 bits (61), Expect = 3.7
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = -3
Query: 586 TTRAFPCGRQTAHLAMFVYRIHDPIDLRITANSIVRRI 473
TTR PCG T F +RIH + I++ +V++I
Sbjct: 75 TTRKSPCGEGTNTWDRFEFRIHKRVIDLISSPDVVKQI 112
>03_02_0370 + 7853646-7853772,7854508-7854621,7855152-7855294
Length = 127
Score = 28.7 bits (61), Expect = 3.7
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = -3
Query: 586 TTRAFPCGRQTAHLAMFVYRIHDPIDLRITANSIVRRI 473
TTR PCG T F +RIH + I++ +V++I
Sbjct: 72 TTRKSPCGEGTNTWDRFEFRIHKRVIDLISSPDVVKQI 109
>02_05_0460 - 29224525-29224620,29225525-29226625
Length = 398
Score = 28.3 bits (60), Expect = 4.8
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Frame = +3
Query: 150 GNIAS*LVCTALPCPRGQTRREGLDTVPSKVML--SSESACAVVAVNAQCPRELPT 311
G+ A+ L C A C R RRE P+ + L +S SA A + + P PT
Sbjct: 190 GDGAAALACAACGCHRSFHRREPAVVAPASLSLCPASASASAAAGLVSLSPSATPT 245
>01_06_1201 -
35380338-35380496,35381200-35381322,35381521-35382066,
35382285-35382392,35382695-35383225,35383614-35383743,
35384225-35385081,35385303-35385408,35387119-35387230,
35389255-35389347,35389723-35389771,35389859-35389897,
35390671-35390757,35391613-35391873,35391957-35392166,
35392413-35393507
Length = 1501
Score = 28.3 bits (60), Expect = 4.8
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +1
Query: 106 KVERCYAISLAYKSVAISPVDSYAPRSH 189
+ E+C A+ AY+++A DS PR H
Sbjct: 25 RYEKCVALLAAYQTLAFPGFDSQTPRLH 52
>01_01_1084 - 8521796-8522389,8522503-8522983,8523084-8523190
Length = 393
Score = 27.9 bits (59), Expect = 6.4
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = -3
Query: 340 LVDTMALGFAVGSSLGHWAFTATTAHADSEDNITLLGTVSKPSRLVWPRG 191
LV +G V S GHW ++ + AD+E +L + + +RL+ RG
Sbjct: 303 LVFHSRMGLCVQISRGHWLWSVWESIADAELAADILHSSATSTRLIPIRG 352
>07_01_0763 + 5854986-5855000,5855266-5855775,5855899-5856159
Length = 261
Score = 27.5 bits (58), Expect = 8.5
Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Frame = -3
Query: 337 VDTMALGFAVGSSLGHWAFTATTAHADSE--DNITLLGTVSKPSRLVWPRGHGSA 179
V M G G S+G + AH ++ DN+ L GT + W G GSA
Sbjct: 88 VKNMVCGPGHGISIGSLGDHNSEAHVNNVTVDNVRLYGTTNGARIKTWQGGKGSA 142
>07_01_0760 -
5844349-5844401,5844521-5844665,5844782-5845297,
5845405-5845596,5845686-5845817,5845926-5846069
Length = 393
Score = 27.5 bits (58), Expect = 8.5
Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Frame = -3
Query: 337 VDTMALGFAVGSSLGHWAFTATTAHADSE--DNITLLGTVSKPSRLVWPRGHGSA 179
V M G G S+G + AH ++ DN+ L GT + W G GSA
Sbjct: 241 VKNMVCGPGHGISIGSLGDHNSEAHVNNVTVDNVRLYGTANGARIKTWQGGKGSA 295
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,176,176
Number of Sequences: 37544
Number of extensions: 325685
Number of successful extensions: 927
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 903
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 925
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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