Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_M02
(591 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U88168-3|AAC24397.1| 204|Caenorhabditis elegans Ribosomal prote... 226 1e-59
U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy ch... 29 3.3
L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy ch... 29 3.3
AF000264-2|AAC71121.1| 761|Caenorhabditis elegans Half transpor... 29 3.3
Z70213-9|CAA94177.1| 1520|Caenorhabditis elegans Hypothetical pr... 28 4.3
Z49069-5|CAA88867.1| 1520|Caenorhabditis elegans Hypothetical pr... 28 4.3
U80438-4|AAB37634.2| 1415|Caenorhabditis elegans Uncoordinated p... 28 4.3
U70618-1|AAB17088.1| 1415|Caenorhabditis elegans unc-40 protein. 28 4.3
Z30317-5|CAA82971.4| 1890|Caenorhabditis elegans Hypothetical pr... 28 5.7
>U88168-3|AAC24397.1| 204|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 15 protein.
Length = 204
Score = 226 bits (552), Expect = 1e-59
Identities = 99/174 (56%), Positives = 126/174 (72%)
Frame = +2
Query: 68 MGAYRYIQELYRKKLSDVMRFLLRIRVWQYRQLTRMHRAPMPTRPDKARRLGYRAKQGYV 247
MGAY+Y+QE++RKK SD +R+LLRIR W YRQL+ +HR P PTRP+KARRLGYRAKQG+V
Sbjct: 1 MGAYKYMQEIWRKKQSDALRYLLRIRTWHYRQLSAVHRVPRPTRPEKARRLGYRAKQGFV 60
Query: 248 IFRIXXXXXXXXXXXXXXATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXNSYW 427
++R+ TYGKPK+HGVN+LK ++ Q++AE NSYW
Sbjct: 61 VYRVRVRRGNRKRPVCKGQTYGKPKTHGVNELKNAKSKQAVAEGRAGRRLGSLRVLNSYW 120
Query: 428 VAQDSSYKYFEVILLDPSHNAIRRDPKINWIVNAVHKHREMRGLTSAGKSSRGL 589
VA+DS+YK++EV+L+DP H AIRR+P WI VHKHRE RGLTSAG+ SRGL
Sbjct: 121 VAEDSTYKFYEVVLIDPFHKAIRRNPDTQWITKPVHKHREQRGLTSAGRKSRGL 174
>U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy chain
protein 1 protein.
Length = 4568
Score = 28.7 bits (61), Expect = 3.3
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +2
Query: 437 DSSYKYFEVILLDPSHNAIRRDP-KINWIVNAVHKHREMR 553
D Y F +L D + R DP K++W V AVHK E R
Sbjct: 420 DDEYDKFIALLRDINKKK-RDDPSKLSWKVTAVHKRLETR 458
>L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy chain
protein.
Length = 4568
Score = 28.7 bits (61), Expect = 3.3
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +2
Query: 437 DSSYKYFEVILLDPSHNAIRRDP-KINWIVNAVHKHREMR 553
D Y F +L D + R DP K++W V AVHK E R
Sbjct: 420 DDEYDKFIALLRDINKKK-RDDPSKLSWKVTAVHKRLETR 458
>AF000264-2|AAC71121.1| 761|Caenorhabditis elegans Half transporter
(pgp related)protein 2 protein.
Length = 761
Score = 28.7 bits (61), Expect = 3.3
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +3
Query: 396 VVVYACLIHTG*HRTLHTNTLKLFY-LILRTMLFAVI 503
V+V CL+ G H L T+T ++Y L+ R ML A +
Sbjct: 722 VIVKGCLVQMGTHTELMTDTDGMYYSLVSRQMLSAKV 758
>Z70213-9|CAA94177.1| 1520|Caenorhabditis elegans Hypothetical
protein K12D12.1 protein.
Length = 1520
Score = 28.3 bits (60), Expect = 4.3
Identities = 14/43 (32%), Positives = 26/43 (60%)
Frame = +2
Query: 446 YKYFEVILLDPSHNAIRRDPKINWIVNAVHKHREMRGLTSAGK 574
YK ++ IL++ + N +RDPK+N I ++K + + + GK
Sbjct: 117 YKIYDEILVNAADNK-QRDPKMNTIKITINKEKNEISVYNNGK 158
>Z49069-5|CAA88867.1| 1520|Caenorhabditis elegans Hypothetical
protein K12D12.1 protein.
Length = 1520
Score = 28.3 bits (60), Expect = 4.3
Identities = 14/43 (32%), Positives = 26/43 (60%)
Frame = +2
Query: 446 YKYFEVILLDPSHNAIRRDPKINWIVNAVHKHREMRGLTSAGK 574
YK ++ IL++ + N +RDPK+N I ++K + + + GK
Sbjct: 117 YKIYDEILVNAADNK-QRDPKMNTIKITINKEKNEISVYNNGK 158
>U80438-4|AAB37634.2| 1415|Caenorhabditis elegans Uncoordinated
protein 40 protein.
Length = 1415
Score = 28.3 bits (60), Expect = 4.3
Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Frame = +3
Query: 195 RGQTRREGLDTVPSKVMLSSESACAVVAVNA-QCPRELPTANPRAMVSTN*NPLATCS 365
R T+ G P SS S ++A Q P TA PR V+ +P A+CS
Sbjct: 1279 RSFTQLAGATPPPPHSAASSSSRPTIIAAGGRQVPVGRATAQPRVNVANIYSPFASCS 1336
>U70618-1|AAB17088.1| 1415|Caenorhabditis elegans unc-40 protein.
Length = 1415
Score = 28.3 bits (60), Expect = 4.3
Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Frame = +3
Query: 195 RGQTRREGLDTVPSKVMLSSESACAVVAVNA-QCPRELPTANPRAMVSTN*NPLATCS 365
R T+ G P SS S ++A Q P TA PR V+ +P A+CS
Sbjct: 1279 RSFTQLAGATPPPPHSAASSSSRPTIIAAGGRQVPVGRATAQPRVNVANIYSPFASCS 1336
>Z30317-5|CAA82971.4| 1890|Caenorhabditis elegans Hypothetical
protein T16G12.1 protein.
Length = 1890
Score = 27.9 bits (59), Expect = 5.7
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +1
Query: 328 WCQPTETHSQPAVYC*GACWSP 393
WC P T+ + A+YC A ++P
Sbjct: 807 WCNPYSTNLRKAIYCGAAKYAP 828
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,387,088
Number of Sequences: 27780
Number of extensions: 267292
Number of successful extensions: 726
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 725
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1247656244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -