Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_M01
(500 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 31 0.13
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz... 30 0.17
SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|ch... 29 0.52
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 2.1
SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase Exg2|Schizosacch... 27 2.1
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|... 26 3.7
SPAC57A7.08 |pzh1||serine/threonine protein phosphatase Pzh1|Sch... 26 3.7
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 25 4.8
SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor Atf1|Sch... 25 4.8
SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 25 4.8
SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr 3|||M... 25 4.8
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar... 25 6.4
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch... 25 6.4
SPAC13F5.02c |ptr6|taf7|transcription factor TFIID complex subun... 25 6.4
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa... 25 6.4
SPBC17D1.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 6.4
SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo... 25 8.4
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr... 25 8.4
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 25 8.4
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ... 25 8.4
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo... 25 8.4
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 30.7 bits (66), Expect = 0.13
Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = +3
Query: 90 PPALSSGFPRPSPDRRSTLSTHATSSGAW*PFKNPLAPSGIGSASNVPSP-LQLKFSNSS 266
PPA S PRP P ST ST +SS A + +P +PS A P+ L+L+ +
Sbjct: 275 PPATPSQPPRP-PTNASTRSTGTSSSMAH-SYDSPPSPSSPSDAYGDPNQHLKLRTDSHD 332
Query: 267 GNVGYFGSS 293
+ Y SS
Sbjct: 333 DSRAYDSSS 341
Score = 25.4 bits (53), Expect = 4.8
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Frame = +3
Query: 66 SPQRSPQRPPALSSGFPRPSPDRRSTLSTHATSSGAW-*PFKNPLAPSGIGSASNVPSP 239
SP+ P P + P P P TL +T++ P +N + +GS N+P P
Sbjct: 220 SPEIPPTYTPKQADPLPAPPPPPPPTLPPQSTNTSQLPMPSRN---VNNLGSQVNIPPP 275
>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1273
Score = 30.3 bits (65), Expect = 0.17
Identities = 24/77 (31%), Positives = 35/77 (45%)
Frame = +3
Query: 51 TAGHKSPQRSPQRPPALSSGFPRPSPDRRSTLSTHATSSGAW*PFKNPLAPSGIGSASNV 230
T G PQ Q+ + F SP + ST+ + S +NPL+ SG GS +
Sbjct: 185 TVGSSFPQ---QKSSTYENFFDANSPSSQQFPSTYPSRS------QNPLSSSGDGSTAIH 235
Query: 231 PSPLQLKFSNSSGNVGY 281
P+Q + SN+ N Y
Sbjct: 236 AGPIQHQNSNAFSNYPY 252
>SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 778
Score = 28.7 bits (61), Expect = 0.52
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Frame = -3
Query: 156 RGWTRWTDDLVKVAGIRWI--GLGVVVEIF 73
+GWT D ++KVAGI + G G +VE F
Sbjct: 235 KGWTSPKDVILKVAGILTVKGGTGAIVEYF 264
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 26.6 bits (56), Expect = 2.1
Identities = 20/84 (23%), Positives = 31/84 (36%), Gaps = 1/84 (1%)
Frame = +3
Query: 24 IYPLNRKTSTAGHKSPQRSPQRPPALSSGFPRPSPDRRSTLSTHATSSG-AW*PFKNPLA 200
+ P TST+ +P +S P PS T ST +G + P +
Sbjct: 301 VTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLPSTSTSCTTSTSIPPTGNSTTPVTPTVP 360
Query: 201 PSGIGSASNVPSPLQLKFSNSSGN 272
P+ S S P P + +S +
Sbjct: 361 PTSTSSTSTPPPPASTSSTGTSSS 384
>SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase
Exg2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 570
Score = 26.6 bits (56), Expect = 2.1
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = -3
Query: 102 IGLGVVVEIFEETYVQQWTSFGLMD 28
+G+ ++ EIF T V +W L+D
Sbjct: 81 LGVNIIDEIFNSTQVPEWAKNSLLD 105
>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 743
Score = 25.8 bits (54), Expect = 3.7
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +3
Query: 36 NRKTSTAGHKSPQRSPQRPPALSSGFPRPSPDRRSTLSTHATS 164
+R T A RS Q+P + +S P P+P +T +T+
Sbjct: 594 SRPTPNASSPLDVRSKQKPSSANSNAPTPAPTVNTTNPESSTN 636
>SPAC57A7.08 |pzh1||serine/threonine protein phosphatase
Pzh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 515
Score = 25.8 bits (54), Expect = 3.7
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +3
Query: 36 NRKTSTAGHKSPQRSPQRPPALSSGFPRPSP 128
+R+TST S R P+ PP+L P PSP
Sbjct: 47 DRRTSTDTTHSRHRYPETPPSLP---PPPSP 74
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 25.4 bits (53), Expect = 4.8
Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Frame = +3
Query: 27 YPLNRKTSTAGHKSPQRSPQRPPALSSGF--PRPSPDRRSTLSTHATSSGAW*PFKNPLA 200
YP S +K P + PAL + F P+ SP L+ ++S + K+PL+
Sbjct: 888 YPFATPPSQRANKYPLNNGANVPALLNSFSSPQLSPLVNRVLNEPSSSPLSSSSLKSPLS 947
Query: 201 PSGI 212
G+
Sbjct: 948 KEGV 951
>SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor
Atf1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 566
Score = 25.4 bits (53), Expect = 4.8
Identities = 15/39 (38%), Positives = 17/39 (43%)
Frame = +3
Query: 51 TAGHKSPQRSPQRPPALSSGFPRPSPDRRSTLSTHATSS 167
T G P RS P +GFP PSP + L H S
Sbjct: 204 TPGVNEPFRSLLTPTG--AGFPAPSPGTANLLGFHTFDS 240
>SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 681
Score = 25.4 bits (53), Expect = 4.8
Identities = 20/60 (33%), Positives = 22/60 (36%)
Frame = +3
Query: 87 RPPALSSGFPRPSPDRRSTLSTHATSSGAW*PFKNPLAPSGIGSASNVPSPLQLKFSNSS 266
R P LSS P PS RRS S+ NP A S S S+SS
Sbjct: 179 RRPGLSSYTPGPSTSRRSISSSSNLGGNPGLIANNPSASKNFAFTSGSSSTNNSTTSSSS 238
>SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 535
Score = 25.4 bits (53), Expect = 4.8
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Frame = +3
Query: 42 KTSTAGHKSPQRSPQRPPALSSGFPRP---SPDRRSTLSTH 155
KT PQ S PPA S+ +P SP+++ + +TH
Sbjct: 319 KTKEPAKPVPQPSSNEPPAPSAENKQPSVSSPEKKESPATH 359
>SPAC26A3.09c |rga2||GTPase activating protein
Rga2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1275
Score = 25.0 bits (52), Expect = 6.4
Identities = 14/48 (29%), Positives = 21/48 (43%)
Frame = +3
Query: 21 FIYPLNRKTSTAGHKSPQRSPQRPPALSSGFPRPSPDRRSTLSTHATS 164
F+ P + + + P SP PP +SS P PD + +L S
Sbjct: 399 FLAPTSNVPAYSTPARPTESPP-PPPISSSSTTPRPDDKPSLPPRGLS 445
>SPBC13E7.02 |cwf24||GCN5-related N
acetyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 533
Score = 25.0 bits (52), Expect = 6.4
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 4/27 (14%)
Frame = +2
Query: 164 FRCVVAIQEPVGPI----GHRFCKQCA 232
F C++ ++ PI GH FC+QCA
Sbjct: 252 FVCLICKKDYRSPIATTCGHHFCEQCA 278
>SPAC13F5.02c |ptr6|taf7|transcription factor TFIID complex subunit
Taf7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 393
Score = 25.0 bits (52), Expect = 6.4
Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Frame = +1
Query: 94 QPYPADSRDLHQIVGPPCP-PTLRLPVR 174
QP P DSR GPP P P +++ R
Sbjct: 10 QPPPNDSRSSTPATGPPPPIPKIKIKTR 37
>SPCC18B5.03 |wee1||dual specificity protein kinase
Wee1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 877
Score = 25.0 bits (52), Expect = 6.4
Identities = 38/132 (28%), Positives = 54/132 (40%), Gaps = 9/132 (6%)
Frame = +3
Query: 24 IYPLNRKTSTAGHKSPQRSPQRPPALSSGFPRPSPDRRSTLSTHATSSGAW*PFKNPLAP 203
++PL+ + T H PQ Q P S F RP+ RS S+ S P +P+A
Sbjct: 79 LHPLSPPSFT--HSQPQIQAQPVPRRPSLFDRPNLVSRS--SSRLGDS----PSLSPVAQ 130
Query: 204 SGIGSASNVPSPLQLK----FSNSSGNV--GYFGSSPD---LIPDSFAQCNSKHSSLHCP 356
PSP ++ N+S V +F SS + P S + SS H P
Sbjct: 131 VANPIHHTAPSPSDVRAFPIHKNASTGVKRSFFSSSMSNGAMSPPSHSPSPFLQSSQHIP 190
Query: 357 LRSFAIALCKEN 392
+ A L K+N
Sbjct: 191 PSTPAQKLRKKN 202
>SPBC17D1.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 250
Score = 25.0 bits (52), Expect = 6.4
Identities = 6/24 (25%), Positives = 19/24 (79%)
Frame = -2
Query: 373 IAKLLKGQWRELCLELHCANESGM 302
+++L + + + LC++L+C+ ++G+
Sbjct: 46 VSELRRSEMKNLCIQLYCSYKAGI 69
>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
L2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 24.6 bits (51), Expect = 8.4
Identities = 11/13 (84%), Positives = 11/13 (84%)
Frame = -2
Query: 457 LKNKYVLSRLNKY 419
LKNK VLSRLN Y
Sbjct: 321 LKNKAVLSRLNPY 333
>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1471
Score = 24.6 bits (51), Expect = 8.4
Identities = 13/48 (27%), Positives = 28/48 (58%)
Frame = -2
Query: 499 SISEYGKI*KVIITLKNKYVLSRLNKYVYKHAVYLAFSLHKAIAKLLK 356
++S Y + ++ ++ K +Y +L V +A+ FS+HK + +LL+
Sbjct: 1008 NLSNYYQALQMTVSEKFEYDTEQLPSRVLFYAMDRYFSIHKKLKQLLE 1055
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 24.6 bits (51), Expect = 8.4
Identities = 11/26 (42%), Positives = 12/26 (46%)
Frame = +1
Query: 109 DSRDLHQIVGPPCPPTLRLPVRGSHS 186
D DL PP PP + LP G S
Sbjct: 1872 DGSDLSNQAAPPPPPPMALPKAGPPS 1897
>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1337
Score = 24.6 bits (51), Expect = 8.4
Identities = 12/34 (35%), Positives = 15/34 (44%)
Frame = +3
Query: 33 LNRKTSTAGHKSPQRSPQRPPALSSGFPRPSPDR 134
L K +T SP R A+S GF P P +
Sbjct: 279 LAAKLATVARGSPSREASLAQAVSEGFVCPDPSQ 312
>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
Ino80|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1604
Score = 24.6 bits (51), Expect = 8.4
Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
Frame = +3
Query: 186 KNPLAPS-GI--GSASNVPSPLQLKFSNSSGNV 275
+ PL PS GI GS SNV P L+F SG +
Sbjct: 1399 RKPLLPSFGIAKGSYSNVRIPSMLRFIADSGKL 1431
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,065,867
Number of Sequences: 5004
Number of extensions: 43922
Number of successful extensions: 153
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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