Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_L24
         (465 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1117 + 34235295-34235505,34235632-34235713,34236079-342361...    27   9.8  
02_04_0326 - 22058648-22058659,22058660-22058812,22059412-22059654     27   9.8  
02_02_0060 + 6446317-6446871,6447836-6448276,6449035-6449265,644...    27   9.8  

>02_05_1117 +
           34235295-34235505,34235632-34235713,34236079-34236158,
           34236271-34236311,34236888-34236985,34237514-34237627,
           34238905-34239106
          Length = 275

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 7/16 (43%), Positives = 8/16 (50%)
 Frame = +1

Query: 364 CSAIFTMWCISGCCIW 411
           C  +   WC   CCIW
Sbjct: 6   CFMLLPCWCREACCIW 21


>02_04_0326 - 22058648-22058659,22058660-22058812,22059412-22059654
          Length = 135

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = -3

Query: 367 YTM*FNRNLFIFISLIHGFDSLQTTSSHFHHRRVDNIIIIFI 242
           +T+  +    I+  L+  F ++QTTSS  +   V NI+I+ +
Sbjct: 59  WTIALHYKAHIYRWLLQKFSAIQTTSSQRNAAVVGNIVIVLV 100


>02_02_0060 +
           6446317-6446871,6447836-6448276,6449035-6449265,
           6449382-6449473,6449555-6449615,6451541-6451618,
           6451853-6452014
          Length = 539

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -2

Query: 110 TVSYKDILCLLVFTIFK*L*DFYFCTATNITT 15
           T SY    C+L+ T  + L D +FC +  ITT
Sbjct: 488 TSSYATDSCMLLVTYSEVLYDCFFCRSLQITT 519


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,986,980
Number of Sequences: 37544
Number of extensions: 195457
Number of successful extensions: 437
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 430
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 437
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 931320312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)