Samia BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_L24
         (465 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439060-8|CAD27759.1|  808|Anopheles gambiae putative V-ATPase ...    26   0.56 
AB090815-2|BAC57906.1|  973|Anopheles gambiae reverse transcript...    23   4.0  
AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.            23   5.3  
U42429-1|AAB54088.1|  596|Anopheles gambiae engrailed protein.         23   6.9  
U42214-1|AAB58461.1|  596|Anopheles gambiae engrailed protein.         23   6.9  
AY578799-1|AAT07304.1|  679|Anopheles gambiae brinker protein.         23   6.9  

>AJ439060-8|CAD27759.1|  808|Anopheles gambiae putative V-ATPase
           protein.
          Length = 808

 Score = 26.2 bits (55), Expect = 0.56
 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = -3

Query: 355 FNRNLFIFISLIHG-FDSLQTTSSHFHHRRVDNIIIIFIPRM 233
           F   L I   ++H  F    +  +H H  R  NI++ FIP+M
Sbjct: 521 FKMKLSIIFGVVHMIFGVCMSLVNHNHFNRRVNILLEFIPQM 562


>AB090815-2|BAC57906.1|  973|Anopheles gambiae reverse transcriptase
           protein.
          Length = 973

 Score = 23.4 bits (48), Expect = 4.0
 Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
 Frame = -1

Query: 405 TAPRNAPHSEDCTTLCNSTEISSYSFLLYMALTLSKPLVATFTTGALI--ISLSFSFLVW 232
           T  RN+  S    T C+    SS ++ +  A TLS   V  +T G+    ++    F  W
Sbjct: 159 TFVRNSRTSIIDLTFCSPALASSMNWRVSNAYTLSDHRVIRYTAGSKCHRVAQGSGFPAW 218

Query: 231 K 229
           K
Sbjct: 219 K 219


>AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.
          Length = 3320

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +2

Query: 368  VQSSLCGAFLGAVYGGF 418
            V+ ++ GA +GA+ GGF
Sbjct: 2719 VKKAIVGATMGAIVGGF 2735


>U42429-1|AAB54088.1|  596|Anopheles gambiae engrailed protein.
          Length = 596

 Score = 22.6 bits (46), Expect = 6.9
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -2

Query: 434 PLESE*NHHIQHPEMHHI 381
           P+ ++  HH QHP  H +
Sbjct: 86  PMPAQPPHHHQHPHHHQL 103


>U42214-1|AAB58461.1|  596|Anopheles gambiae engrailed protein.
          Length = 596

 Score = 22.6 bits (46), Expect = 6.9
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -2

Query: 434 PLESE*NHHIQHPEMHHI 381
           P+ ++  HH QHP  H +
Sbjct: 86  PMPAQPPHHHQHPHHHQL 103


>AY578799-1|AAT07304.1|  679|Anopheles gambiae brinker protein.
          Length = 679

 Score = 22.6 bits (46), Expect = 6.9
 Identities = 9/19 (47%), Positives = 11/19 (57%), Gaps = 2/19 (10%)
 Frame = -2

Query: 410 HIQ--HPEMHHIVKIALHY 360
           H+Q  HP +HH     LHY
Sbjct: 130 HVQQHHPSVHHPAHHPLHY 148



 Score = 22.6 bits (46), Expect = 6.9
 Identities = 9/28 (32%), Positives = 12/28 (42%)
 Frame = -2

Query: 416 NHHIQHPEMHHIVKIALHYVIQQKSLHI 333
           +HH  HP  HH     L     Q+  H+
Sbjct: 157 HHHHHHPHHHHPGLTGLMQAPSQQQQHL 184


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 477,446
Number of Sequences: 2352
Number of extensions: 8603
Number of successful extensions: 18
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 563,979
effective HSP length: 59
effective length of database: 425,211
effective search space used: 40395045
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)