Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_L24
         (465 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL117200-14|CAJ85779.1|  465|Caenorhabditis elegans Hypothetical...    31   0.54 
AL117200-12|CAB60583.1|  461|Caenorhabditis elegans Hypothetical...    31   0.54 
AL117200-11|CAD54172.1|  530|Caenorhabditis elegans Hypothetical...    31   0.54 
AF024492-5|AAF98621.1|  334|Caenorhabditis elegans Serpentine re...    28   2.9  
AF016657-7|AAB93660.1|  164|Caenorhabditis elegans Hypothetical ...    28   2.9  
Z70213-4|CAA94173.1|  212|Caenorhabditis elegans Hypothetical pr...    27   5.0  
Z66565-10|CAB76415.1|  281|Caenorhabditis elegans Hypothetical p...    27   5.0  
U40941-6|AAA81711.2|  435|Caenorhabditis elegans Jnk kinase prot...    27   5.0  
AL032659-2|CAB82215.1|  281|Caenorhabditis elegans Hypothetical ...    27   5.0  
AB024086-1|BAA82641.1|  435|Caenorhabditis elegans JKK-1 protein.      27   5.0  
CU457741-4|CAM36345.1| 1259|Caenorhabditis elegans Hypothetical ...    27   6.6  
Z81500-6|CAB04099.1|  221|Caenorhabditis elegans Hypothetical pr...    27   8.8  

>AL117200-14|CAJ85779.1|  465|Caenorhabditis elegans Hypothetical
           protein Y50E8A.4c protein.
          Length = 465

 Score = 30.7 bits (66), Expect = 0.54
 Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
 Frame = -1

Query: 414 PPYTAPRNAPHS-EDCTTLCNSTEISSYSFLLYMALTLSKPLVATFTTGALIISLS--FS 244
           PP+  P   PH  ++  T  N+T ISS +  +    T  KP +A  T  + I SLS    
Sbjct: 12  PPHQPPPPVPHHHQNQPTHNNTTTISSATSSINTTTTSKKPTIAAPTAPSPIKSLSDHTG 71

Query: 243 FLVWKNGKIKF 211
            L+  NG + F
Sbjct: 72  RLMQLNGHVGF 82


>AL117200-12|CAB60583.1|  461|Caenorhabditis elegans Hypothetical
           protein Y50E8A.4b protein.
          Length = 461

 Score = 30.7 bits (66), Expect = 0.54
 Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
 Frame = -1

Query: 414 PPYTAPRNAPHS-EDCTTLCNSTEISSYSFLLYMALTLSKPLVATFTTGALIISLS--FS 244
           PP+  P   PH  ++  T  N+T ISS +  +    T  KP +A  T  + I SLS    
Sbjct: 12  PPHQPPPPVPHHHQNQPTHNNTTTISSATSSINTTTTSKKPTIAAPTAPSPIKSLSDHTG 71

Query: 243 FLVWKNGKIKF 211
            L+  NG + F
Sbjct: 72  RLMQLNGHVGF 82


>AL117200-11|CAD54172.1|  530|Caenorhabditis elegans Hypothetical
           protein Y50E8A.4a protein.
          Length = 530

 Score = 30.7 bits (66), Expect = 0.54
 Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
 Frame = -1

Query: 414 PPYTAPRNAPHS-EDCTTLCNSTEISSYSFLLYMALTLSKPLVATFTTGALIISLS--FS 244
           PP+  P   PH  ++  T  N+T ISS +  +    T  KP +A  T  + I SLS    
Sbjct: 81  PPHQPPPPVPHHHQNQPTHNNTTTISSATSSINTTTTSKKPTIAAPTAPSPIKSLSDHTG 140

Query: 243 FLVWKNGKIKF 211
            L+  NG + F
Sbjct: 141 RLMQLNGHVGF 151


>AF024492-5|AAF98621.1|  334|Caenorhabditis elegans Serpentine
           receptor, class h protein129 protein.
          Length = 334

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = -3

Query: 352 NRNLFIFISLIHGFDSLQTTSSHFHHRRVDNIIIIFIPRMEKWK 221
           N  +FIFI+L HG   L T +    H+     + + IPR  KW+
Sbjct: 277 NNLVFIFIAL-HGL--LSTITMFIVHKPYRECLKLIIPRCPKWR 317


>AF016657-7|AAB93660.1|  164|Caenorhabditis elegans Hypothetical
           protein C16C4.16 protein.
          Length = 164

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 297 VWRESKPCIREMNMKRFLLNYIV 365
           +W    PC R+ N K FLLN+ V
Sbjct: 1   MWLPDSPCNRDENQKIFLLNHTV 23


>Z70213-4|CAA94173.1|  212|Caenorhabditis elegans Hypothetical
           protein ZK930.5 protein.
          Length = 212

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +1

Query: 142 YYDL*VLIVFIIKYVANGCKINTEFNFSIFPYEE 243
           +YD   ++   IK++AN   I T++ F  F  EE
Sbjct: 156 WYDSFGIVGLPIKFIANDAVIGTDYRFYTFDQEE 189


>Z66565-10|CAB76415.1|  281|Caenorhabditis elegans Hypothetical
           protein Y71H9A.3 protein.
          Length = 281

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 4/34 (11%)
 Frame = +3

Query: 375 LHYVVHFWVL----YMVVLFTLERLTFISLKIIK 464
           ++Y V  W++    Y+VVLFTL    F  LK+++
Sbjct: 21  VNYTVCGWIITIISYLVVLFTLPLSAFFCLKVVQ 54


>U40941-6|AAA81711.2|  435|Caenorhabditis elegans Jnk kinase protein
           1 protein.
          Length = 435

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
 Frame = +2

Query: 275 VVKVAT--SGLERVKAMYKRNEYEEISVELHSVVQSSLCGA-FLGAVYGGFI 421
           VV+ AT  S L  VK MYK +  E +   L  V   S+C + F+   YG F+
Sbjct: 135 VVESATVRSKLMAVKTMYKNDNKENLKRILRDVRIMSMCNSPFIVTSYGYFM 186


>AL032659-2|CAB82215.1|  281|Caenorhabditis elegans Hypothetical
           protein Y71H9A.3 protein.
          Length = 281

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 4/34 (11%)
 Frame = +3

Query: 375 LHYVVHFWVL----YMVVLFTLERLTFISLKIIK 464
           ++Y V  W++    Y+VVLFTL    F  LK+++
Sbjct: 21  VNYTVCGWIITIISYLVVLFTLPLSAFFCLKVVQ 54


>AB024086-1|BAA82641.1|  435|Caenorhabditis elegans JKK-1 protein.
          Length = 435

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
 Frame = +2

Query: 275 VVKVAT--SGLERVKAMYKRNEYEEISVELHSVVQSSLCGA-FLGAVYGGFI 421
           VV+ AT  S L  VK MYK +  E +   L  V   S+C + F+   YG F+
Sbjct: 135 VVESATVRSKLMAVKTMYKNDNKENLKRILRDVRIMSMCNSPFIVTSYGYFM 186


>CU457741-4|CAM36345.1| 1259|Caenorhabditis elegans Hypothetical
           protein C42C1.4a protein.
          Length = 1259

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
 Frame = +2

Query: 239 RNENDNDIINAPVVKV-ATSGLERVKAMYKRNEYEEISVELHSVVQSSLCGAFLGAVYGG 415
           R +  ND+I+A +  +       R   M+KR  +  ++ + HS++  ++ G   GA+   
Sbjct: 449 RYKERNDVISASLYLLDVCRDKVRASEMFKRESHSLLAEKAHSLLTETVAGVGGGALSDL 508

Query: 416 FIHSRE 433
             H R+
Sbjct: 509 LAHYRK 514


>Z81500-6|CAB04099.1|  221|Caenorhabditis elegans Hypothetical
           protein F11D11.8 protein.
          Length = 221

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +3

Query: 99  ITDCVCKCITLHQILL*FMSTNCFYY 176
           + DC+ +C    + LL F ++ CF+Y
Sbjct: 43  VKDCIDECFEDSECLLAFFNSACFHY 68


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,511,630
Number of Sequences: 27780
Number of extensions: 210931
Number of successful extensions: 621
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 607
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 621
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 829055604
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)