Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_L24
         (465 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    25   0.30 
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    25   0.30 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   1.6  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   2.1  
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    22   2.8  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    22   2.8  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    22   2.8  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    22   2.8  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    22   2.8  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    22   2.8  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    22   2.8  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    22   2.8  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    22   3.7  

>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 25.4 bits (53), Expect = 0.30
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +1

Query: 367 SAIFTMWCISGCCIWWFYSLSRGL 438
           S +  M  +  CC+ W +S S+ L
Sbjct: 65  SMLLIMSLVGNCCVIWIFSTSKSL 88


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 25.4 bits (53), Expect = 0.30
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +1

Query: 367 SAIFTMWCISGCCIWWFYSLSRGL 438
           S +  M  +  CC+ W +S S+ L
Sbjct: 65  SMLLIMSLVGNCCVIWIFSTSKSL 88


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = -1

Query: 399  PRNAPHSEDCTTLCNST 349
            P   PH   CTTL + T
Sbjct: 1081 PEQPPHDTTCTTLTSQT 1097


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = -2

Query: 128 SNTFTYTVSYKDILCLLVFTIF 63
           +N + +     D +CL++FT+F
Sbjct: 516 TNDWKFAAMVIDRMCLIIFTLF 537


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 2.8
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = -2

Query: 95  DILCLLVFTIF 63
           D LCL+VFT+F
Sbjct: 433 DRLCLIVFTLF 443


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 2.8
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = -2

Query: 95  DILCLLVFTIF 63
           D LCL+VFT+F
Sbjct: 433 DRLCLIVFTLF 443


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 2.8
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = -2

Query: 95  DILCLLVFTIF 63
           D LCL+VFT+F
Sbjct: 433 DRLCLIVFTLF 443


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 2.8
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = -2

Query: 95  DILCLLVFTIF 63
           D LCL+VFT+F
Sbjct: 433 DRLCLIVFTLF 443


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 2.8
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = -2

Query: 95  DILCLLVFTIF 63
           D LCL+VFT+F
Sbjct: 433 DRLCLIVFTLF 443


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 2.8
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = -2

Query: 95  DILCLLVFTIF 63
           D LCL+VFT+F
Sbjct: 433 DRLCLIVFTLF 443


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.2 bits (45), Expect = 2.8
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = -2

Query: 95  DILCLLVFTIF 63
           D LCL+VFT+F
Sbjct: 501 DRLCLIVFTLF 511


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.2 bits (45), Expect = 2.8
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = -2

Query: 95  DILCLLVFTIF 63
           D LCL+VFT+F
Sbjct: 501 DRLCLIVFTLF 511


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 11/48 (22%), Positives = 23/48 (47%)
 Frame = +2

Query: 227 FFHTRNENDNDIINAPVVKVATSGLERVKAMYKRNEYEEISVELHSVV 370
           FF +  + D   +NA V ++A    +       RN+  + S  +H+++
Sbjct: 67  FFDSLWQPDPYFLNAKVSEIAALNHKFSSVTLYRNKTVKYSARMHAII 114


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,599
Number of Sequences: 438
Number of extensions: 2995
Number of successful extensions: 13
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12436029
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)