Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_L23
(501 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3F10.03 |||glycine tRNA-ligase|Schizosaccharomyces pombe|chr... 33 0.032
SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces pomb... 30 0.22
SPCC285.17 |spp27|uaf30|RNA polymerase I upstream activation fac... 28 0.91
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom... 27 1.2
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha... 27 1.2
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 27 1.6
SPBC30D10.04 |swi3||replication fork protection complex subunit ... 26 2.8
SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr 2|... 26 2.8
SPAC13F5.02c |ptr6|taf7|transcription factor TFIID complex subun... 26 3.7
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ... 25 4.8
SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz... 25 6.4
SPCC320.06 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 25 6.4
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce... 25 6.4
SPAC144.15c |cog1||Golgi transport complex subunit Cog1 |Schizos... 25 6.4
SPAC4D7.09 |tif223||translation initiation factor eIF2B|Schizosa... 25 6.4
SPAC3G9.02 |oar2||3-oxoacyl-[acyl-carrier-protein] reductase Oar... 25 6.4
SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual 25 8.4
SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31 |... 25 8.4
SPBC146.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 8.4
>SPAC3F10.03 |||glycine tRNA-ligase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 652
Score = 32.7 bits (71), Expect = 0.032
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Frame = +1
Query: 124 ANNVGVYNCTCTDTIFERPPPRSFRKWKAVNGADKEAYDIIIHC-SHKVRQSKEEVILEP 300
+N + Y C C D + S+ + V AD+ AYD+ +H + K +E + EP
Sbjct: 357 SNEMAHYACDCWDAEIQC----SYGWIECVGCADRSAYDLSVHSKATKTPLVVQEALPEP 412
Query: 301 ILEYQFDMGASR 336
++ QF++ +R
Sbjct: 413 VVVEQFEVEVNR 424
>SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 497
Score = 29.9 bits (64), Expect = 0.22
Identities = 11/34 (32%), Positives = 23/34 (67%)
Frame = +1
Query: 13 ESDAKENDPERSKKNDAKNEMSEEIEENSAKRRN 114
+ D KE E+SKK + ++ SEE++++ K+++
Sbjct: 463 KKDKKEKKKEKSKKKRSADDASEEVKKSKKKKKS 496
>SPCC285.17 |spp27|uaf30|RNA polymerase I upstream activation factor
complex subunit Spp27|Schizosaccharomyces pombe|chr
3|||Manual
Length = 233
Score = 27.9 bits (59), Expect = 0.91
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = +1
Query: 1 ARGTESD-AKENDPERSKKNDAKN-EMSEEIEENSAKRRNIDDANN 132
AR T+ A EN E KK + + E+ EE ++RN D ANN
Sbjct: 70 ARKTKGKRATENGTEEGKKPAKRTRKRKEDGEEGGKRKRNQDPANN 115
>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1158
Score = 27.5 bits (58), Expect = 1.2
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +1
Query: 118 DDANNVGVYNCTCTDTIFERPPPRS 192
D+ NN+ + +C T+F PPP S
Sbjct: 586 DEGNNIQNHVLSCYKTLFFEPPPNS 610
>SPCC1235.05c |fft2||fun thirty related protein
Fft2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1284
Score = 27.5 bits (58), Expect = 1.2
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +1
Query: 40 ERSKKNDAKNEMSEEIEENSAKRRNIDDANN 132
E SKK D N++S IEE K + + NN
Sbjct: 1250 EESKKPDVLNQVSLSIEEEKPKNKESEVDNN 1280
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 27.1 bits (57), Expect = 1.6
Identities = 23/110 (20%), Positives = 49/110 (44%), Gaps = 2/110 (1%)
Frame = +1
Query: 13 ESDAKENDPERSKKNDAKNEMSEEIEENSAKRRNIDDANNVGVYNCTCTDTIFERPPPRS 192
E + S DAKNE+ +++ S R+N + N + D FE +
Sbjct: 1424 EESLSNQRQKESSLLDAKNELEHMLDDTS--RKNSSLMEKIESINSSLDDKSFEL--ASA 1479
Query: 193 FRKWKAVNGADKEAYDIIIHCSHKVRQSKEEVILE--PILEYQFDMGASR 336
K A+ E+ ++ + +++++KE++ ++ I E ++ AS+
Sbjct: 1480 VEKLGALQKLHSESLSLMENIKSQLQEAKEKIQVDESTIQELDHEITASK 1529
>SPBC30D10.04 |swi3||replication fork protection complex subunit
Swi3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 181
Score = 26.2 bits (55), Expect = 2.8
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +1
Query: 7 GTESDAKENDPERSKKNDAKNEMSEEIEEN 96
G E +EN E KKN+ + E +EEN
Sbjct: 9 GVEKLVEENKREEVKKNEEEKEFDLGLEEN 38
>SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr
2|||Manual
Length = 207
Score = 26.2 bits (55), Expect = 2.8
Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = +1
Query: 16 SDAKENDPERSKKNDAKNEMSEEIEENSA-KRRNIDDANNVGVYNCTCTDTIFERPPPRS 192
S + + +KKN + + E + ++ RNIDDA ++ N + + +R P R
Sbjct: 73 SKGGKGSKKAAKKNSSLDAFLNETPQTASYSARNIDDALDLLSLNNSSSKDKIDRHPERR 132
Query: 193 FR 198
F+
Sbjct: 133 FK 134
>SPAC13F5.02c |ptr6|taf7|transcription factor TFIID complex subunit
Taf7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 393
Score = 25.8 bits (54), Expect = 3.7
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +1
Query: 13 ESDAKENDPERSKKNDAKNEMSEEIEENSAKRR-NIDDANN 132
E++A + E ++N E E+E + KRR + D+A N
Sbjct: 323 ENEADDETRENKRQNRLVREFISELESSIQKRRKDADEATN 363
>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1044
Score = 25.4 bits (53), Expect = 4.8
Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Frame = +1
Query: 10 TESDAKENDPERSKKNDA-KNEMSEEIEENSAKRRNIDD-ANNVGVYNCTCTDTIFERPP 183
T+S+ K+ + E + ++E+ + IEE+S + +DD N G+ + D + E
Sbjct: 678 TKSNCKQMEEEMQVLREGHESEIKDFIEEHSKLTKQLDDIKNQFGIISSKNRDLLSELEK 737
Query: 184 PRS 192
+S
Sbjct: 738 SKS 740
>SPBC16C6.07c |rpt1||19S proteasome regulatory subunit
Rpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 25.0 bits (52), Expect = 6.4
Identities = 16/48 (33%), Positives = 21/48 (43%)
Frame = -2
Query: 455 DIISNVPTSPVAPSTRTFKSDTF*RSLRERDKLSILLSCILLAPISNW 312
+++ + T P A K DT R D + I S LAPIS W
Sbjct: 33 ELLKSYATGPYARELAAIKEDTEAVLKRINDTVGIKESDTGLAPISFW 80
>SPCC320.06 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 289
Score = 25.0 bits (52), Expect = 6.4
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +1
Query: 91 ENSAKRRNIDDANNVG 138
+NS KRRN+D N+G
Sbjct: 60 DNSWKRRNLDSKRNIG 75
>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2310
Score = 25.0 bits (52), Expect = 6.4
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = -2
Query: 353 ILLSCILLAPISNWYSKIGSR--ITSSLDCLTLCEQW 249
+L SC+ L P + W SK+ +R + S L +C W
Sbjct: 823 LLKSCLFLLPRNFWNSKLYTRKDLISIHISLAMCYWW 859
>SPAC144.15c |cog1||Golgi transport complex subunit Cog1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 701
Score = 25.0 bits (52), Expect = 6.4
Identities = 10/35 (28%), Positives = 23/35 (65%)
Frame = -2
Query: 308 SKIGSRITSSLDCLTLCEQWIIMS*ASLSAPLTAF 204
+++ +TSSL +++ WI+++ A++S+ L F
Sbjct: 172 NRLKQAMTSSLSKVSVVTSWILLNQANISSGLDIF 206
>SPAC4D7.09 |tif223||translation initiation factor
eIF2B|Schizosaccharomyces pombe|chr 1|||Manual
Length = 468
Score = 25.0 bits (52), Expect = 6.4
Identities = 13/45 (28%), Positives = 19/45 (42%)
Frame = +1
Query: 148 CTCTDTIFERPPPRSFRKWKAVNGADKEAYDIIIHCSHKVRQSKE 282
C D+I PP K++ N + Y ++ H QSKE
Sbjct: 155 CLSCDSIVGLPPIYGLDKFRLDNPSALAVYSPVLKYEHITSQSKE 199
>SPAC3G9.02 |oar2||3-oxoacyl-[acyl-carrier-protein] reductase Oar2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 236
Score = 25.0 bits (52), Expect = 6.4
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +2
Query: 314 SSIWVRAGCKRAKSIACLSLSSYVRMCHF*MSEW 415
SS+ VR K SI C +L S +++ + EW
Sbjct: 88 SSLCVRTSEKEIDSIICTNLVSAIKLSKMAILEW 121
>SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual
Length = 706
Score = 24.6 bits (51), Expect = 8.4
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +1
Query: 16 SDAKENDPERSKKNDAKNEMSEEIEENSAKRRNI 117
+ A+ENDPE + + +EE AKRRN+
Sbjct: 226 NSAEENDPELQRVIEESKRQAEE----DAKRRNM 255
>SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1032
Score = 24.6 bits (51), Expect = 8.4
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = -1
Query: 261 MRAMDYNVIGLFIRTVDRFPFPETPRRRSLKYCI 160
++A++YN +R D FP+ +R K+ I
Sbjct: 986 LKALNYNNKATLLRMYDEVDFPKNQQRNKEKFRI 1019
>SPBC146.02 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 263
Score = 24.6 bits (51), Expect = 8.4
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Frame = -2
Query: 476 LSHHSSDDIISNV---PTSPVAPSTRTFKSDTF*RSLRERDKLSILLSCILLAPIS 318
LSHH SD++I+ + SPV+P + + L E SI S LL+PIS
Sbjct: 46 LSHHISDELINAIYKELKSPVSPWDKNISQHS--PWLLEAASNSIGDSSPLLSPIS 99
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.311 0.128 0.372
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,950,140
Number of Sequences: 5004
Number of extensions: 38191
Number of successful extensions: 111
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
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