Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_L23
(501 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0121 - 948450-948904,949073-949224,949389-949449,950201-95... 29 2.1
11_06_0710 - 26492093-26493460 28 3.7
12_01_0132 - 990833-991287,991470-991593,991987-991991,992628-99... 28 4.8
07_02_0012 - 11770058-11770770,11770919-11771000,11771064-117710... 27 6.4
06_03_0640 - 23059473-23060489,23060592-23060651,23063163-230632... 27 6.4
12_02_0002 + 12119832-12120003,12120620-12120866,12121011-121210... 27 8.5
09_04_0087 + 14476539-14476675,14478876-14479635,14479720-144798... 27 8.5
03_06_0398 + 33629421-33629633,33629960-33630063,33630140-336301... 27 8.5
>11_01_0121 -
948450-948904,949073-949224,949389-949449,950201-950336,
951042-951376,952523-952577
Length = 397
Score = 29.1 bits (62), Expect = 2.1
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +1
Query: 73 MSEEIEENSAKRRNIDDANNVGVYNCTCTDTIFE-RPPPRSFR 198
+S ++ + S R+ I+DA N+ +YN T+FE RSFR
Sbjct: 41 ISSDMSDPSTPRK-IEDAKNISIYNDVIDFTLFELETITRSFR 82
>11_06_0710 - 26492093-26493460
Length = 455
Score = 28.3 bits (60), Expect = 3.7
Identities = 13/43 (30%), Positives = 26/43 (60%)
Frame = +1
Query: 4 RGTESDAKENDPERSKKNDAKNEMSEEIEENSAKRRNIDDANN 132
+ SD E+D ++SKK KN +E ++ +K+++ D+ N+
Sbjct: 163 KSKNSDDDEDDKKKSKKK-PKNPDDDEDDKKKSKKKSSDEDND 204
>12_01_0132 -
990833-991287,991470-991593,991987-991991,992628-992763,
993417-993751,994912-994966
Length = 369
Score = 27.9 bits (59), Expect = 4.8
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +1
Query: 73 MSEEIEENSAKRRNIDDANNVGVYNCTCTDTIFE-RPPPRSFR 198
+S ++ + S R+ I+DA N+ +YN T+FE +SFR
Sbjct: 41 ISSDMSDPSTPRK-IEDAKNISIYNDVIDFTLFELETITKSFR 82
>07_02_0012 -
11770058-11770770,11770919-11771000,11771064-11771072,
11771630-11771877,11772006-11772183,11772270-11772278
Length = 412
Score = 27.5 bits (58), Expect = 6.4
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Frame = +1
Query: 19 DAKENDPERSKKNDAKNEMSEEIEENSAKRRNIDDA--NNVGVYNCTCTDTIFERPPPRS 192
D KE +PE +K + +E +E E + K DDA N V + + D +F PRS
Sbjct: 280 DQKE-EPEEKEKKEEPDEKNEGGEADDLKPLTEDDASYNGVAEESHSTKDHLFRVALPRS 338
>06_03_0640 -
23059473-23060489,23060592-23060651,23063163-23063283,
23063476-23065496
Length = 1072
Score = 27.5 bits (58), Expect = 6.4
Identities = 11/39 (28%), Positives = 20/39 (51%)
Frame = +1
Query: 7 GTESDAKENDPERSKKNDAKNEMSEEIEENSAKRRNIDD 123
G ++DP+R +K+D + + E+ +KR DD
Sbjct: 269 GASETISQSDPDRVRKSDIDEGVDVSLIEHESKRIKTDD 307
>12_02_0002 +
12119832-12120003,12120620-12120866,12121011-12121050,
12121584-12121676,12124850-12124928,12124973-12125019,
12126178-12126266,12126353-12126424,12126617-12126710,
12127167-12127206,12127321-12127445,12130472-12130615,
12131510-12131740
Length = 490
Score = 27.1 bits (57), Expect = 8.5
Identities = 21/76 (27%), Positives = 38/76 (50%)
Frame = -2
Query: 371 ERDKLSILLSCILLAPISNWYSKIGSRITSSLDCLTLCEQWIIMS*ASLSAPLTAFHFLK 192
++ K+SI + C A + + GS S+ C+ L Q ++ S + +++FL+
Sbjct: 165 DKGKVSIFVDCSPTA--APMFEGRGSEEFSAELCVAL--QRCLLGGKSGAVVFVSWYFLE 220
Query: 191 LLGGGLSNIVSVQVQL 144
+GGGL I + V L
Sbjct: 221 SMGGGLVGIERIAVNL 236
>09_04_0087 +
14476539-14476675,14478876-14479635,14479720-14479871,
14479958-14480024,14480632-14480831,14480915-14481068,
14481585-14481669,14481766-14481857,14482575-14482766,
14482867-14482992,14483072-14483125,14483494-14483550,
14484509-14484606,14484703-14485038,14485116-14485203,
14486891-14487016,14487082-14487138,14488054-14488133,
14488228-14488270,14488948-14489034,14489331-14489420,
14489996-14490054,14490141-14490231,14490330-14490495,
14490662-14490755,14491787-14492909
Length = 1537
Score = 27.1 bits (57), Expect = 8.5
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = +1
Query: 25 KENDPERSKKNDAKNEMSEEIEENSAKRRNIDDANNVGVYN 147
+EN + + + +NE E+ EEN K I D V N
Sbjct: 148 EENGEKHEENGEKQNENGEKCEENGGKPAQISDDQAVNGCN 188
>03_06_0398 +
33629421-33629633,33629960-33630063,33630140-33630194,
33630293-33630341,33630427-33630599,33630731-33630808,
33630923-33630985,33631400-33631525,33631667-33631795
Length = 329
Score = 27.1 bits (57), Expect = 8.5
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -3
Query: 394 THSDVA*ERETSYRFCSLASCSHPYRTGTPRSVP 293
TH++ A + Y + A+ HPY P+SVP
Sbjct: 41 THAEWAASMQAYYAAAAAAAGGHPYAWPPPQSVP 74
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.311 0.128 0.372
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,837,156
Number of Sequences: 37544
Number of extensions: 249865
Number of successful extensions: 612
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 612
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1059318940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
- SilkBase 1999-2023 -