Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_L22
(572 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P52813 Cluster: 40S ribosomal protein S3a; n=17; Eukary... 277 2e-73
UniRef50_P61247 Cluster: 40S ribosomal protein S3a; n=209; Eukar... 246 3e-64
UniRef50_A7NWS5 Cluster: Chromosome chr5 scaffold_2, whole genom... 235 4e-61
UniRef50_Q54ZW5 Cluster: 40S ribosomal protein S3A; n=2; Dictyos... 205 5e-52
UniRef50_Q5EMY6 Cluster: 40S ribosomal protein S1-like protein; ... 197 1e-49
UniRef50_UPI000049A095 Cluster: 40S ribosomal protein S3a; n=3; ... 180 2e-44
UniRef50_Q23DE3 Cluster: Ribosomal S3Ae family protein; n=1; Tet... 170 2e-41
UniRef50_Q9U4U0 Cluster: Antigen; n=10; Trypanosomatidae|Rep: An... 163 3e-39
UniRef50_A0CCR3 Cluster: Chromosome undetermined scaffold_168, w... 161 1e-38
UniRef50_UPI000041A636 Cluster: PREDICTED: similar to ribosomal ... 134 1e-30
UniRef50_UPI00005042B8 Cluster: UPI00005042B8 related cluster; n... 126 3e-28
UniRef50_UPI00015608D3 Cluster: PREDICTED: similar to ribosomal ... 119 6e-26
UniRef50_A3F4R3 Cluster: Ribosomal protein S3a; n=1; Taenia asia... 119 6e-26
UniRef50_Q7QT21 Cluster: GLP_675_17761_17015; n=1; Giardia lambl... 118 7e-26
UniRef50_A2FDS0 Cluster: Ribosomal protein S3Ae, putative; n=4; ... 105 6e-22
UniRef50_Q9AW90 Cluster: 40S ribosomal Protein S3a; n=1; Guillar... 95 1e-18
UniRef50_Q8SS05 Cluster: 40S RIBOSOMAL PROTEIN S3A; n=1; Encepha... 95 1e-18
UniRef50_Q0W2K9 Cluster: 30S ribosomal protein S3AE; n=2; Euryar... 72 1e-11
UniRef50_Q8Q0F2 Cluster: 30S ribosomal protein S3Ae; n=6; Euryar... 70 4e-11
UniRef50_Q8TVD1 Cluster: 30S ribosomal protein S3Ae; n=1; Methan... 66 4e-10
UniRef50_A7D401 Cluster: Ribosomal protein S3Ae; n=2; Halorubrum... 62 7e-09
UniRef50_O27964 Cluster: 30S ribosomal protein S3Ae; n=1; Archae... 62 7e-09
UniRef50_Q8ZT21 Cluster: 30S ribosomal protein S3Ae; n=4; Pyroba... 61 2e-08
UniRef50_Q3SAA8 Cluster: SSU ribosomal protein S3AE; n=2; enviro... 60 5e-08
UniRef50_Q9YCV8 Cluster: 30S ribosomal protein S3Ae; n=12; Archa... 59 6e-08
UniRef50_Q6LZG0 Cluster: 30S ribosomal protein S3Ae; n=6; Methan... 58 1e-07
UniRef50_Q5V296 Cluster: 30S ribosomal protein S3Ae; n=4; Haloba... 54 2e-06
UniRef50_A7QAT4 Cluster: Chromosome chr5 scaffold_72, whole geno... 52 7e-06
UniRef50_A5UKY8 Cluster: Small subunit ribosomal protein S3Ae; n... 52 1e-05
UniRef50_A4GI78 Cluster: Ribosomal protein S3AE; n=1; uncultured... 51 2e-05
UniRef50_A4YCU2 Cluster: Ribosomal protein S3Ae; n=1; Metallosph... 50 3e-05
UniRef50_A2SQ57 Cluster: Ribosomal protein S3Ae; n=1; Methanocor... 48 1e-04
UniRef50_A0RTS7 Cluster: Ribosomal protein S3AE; n=2; Thermoprot... 47 4e-04
UniRef50_Q3LW71 Cluster: Ribosomal protein S3a; n=1; Bigelowiell... 46 5e-04
UniRef50_A4D1I1 Cluster: Similar to ribosomal protein S3a; 40S r... 41 0.018
UniRef50_Q6KYU3 Cluster: 30S ribosomal protein S3Ae; n=2; Thermo... 40 0.031
UniRef50_Q978Z2 Cluster: 30S ribosomal protein S3Ae; n=2; Thermo... 39 0.096
UniRef50_Q1DMF8 Cluster: Predicted protein; n=1; Coccidioides im... 33 3.6
UniRef50_Q81B91 Cluster: Putative uncharacterized protein; n=4; ... 33 4.8
UniRef50_A1FFR2 Cluster: General secretion pathway protein GspK ... 32 8.3
UniRef50_A7ANW6 Cluster: Putative uncharacterized protein; n=1; ... 32 8.3
>UniRef50_P52813 Cluster: 40S ribosomal protein S3a; n=17;
Eukaryota|Rep: 40S ribosomal protein S3a - Anopheles
gambiae (African malaria mosquito)
Length = 269
Score = 277 bits (678), Expect = 2e-73
Identities = 127/165 (76%), Positives = 148/165 (89%)
Frame = +2
Query: 77 IVDPFTRKDWYDVKAPSMFTKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADSDA 256
+VDPFTRKDWYDVKAP+MF RQVG TLVNRTQGTKIAS+GLKGRVFEVSLADLQ + DA
Sbjct: 21 VVDPFTRKDWYDVKAPNMFKNRQVGKTLVNRTQGTKIASDGLKGRVFEVSLADLQNEPDA 80
Query: 257 ERSFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRV 436
ERSFRKF+L+AE V GR+VL NFHGM LTTDKLR MVKKWQTLIE ++DVKTTDG++LRV
Sbjct: 81 ERSFRKFKLVAESVNGRDVLTNFHGMALTTDKLRSMVKKWQTLIECSVDVKTTDGFMLRV 140
Query: 437 FCIGFTNKDTLSQRKTCYAQHTQVRAIRKKMCEIITRDVTSSELR 571
FCIGFT KD++SQRKTCYAQH+Q++ IR KM II R++TS++L+
Sbjct: 141 FCIGFTIKDSMSQRKTCYAQHSQIKNIRAKMTAIIKREITSTDLK 185
>UniRef50_P61247 Cluster: 40S ribosomal protein S3a; n=209;
Eukaryota|Rep: 40S ribosomal protein S3a - Homo sapiens
(Human)
Length = 264
Score = 246 bits (602), Expect = 3e-64
Identities = 116/165 (70%), Positives = 138/165 (83%)
Frame = +2
Query: 77 IVDPFTRKDWYDVKAPSMFTKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADSDA 256
+VDPF++KDWYDVKAP+MF R +G TLV RTQGTKIAS+GLKGRVFEVSLADLQ D
Sbjct: 21 VVDPFSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADLQND--- 77
Query: 257 ERSFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRV 436
E +FRKF+LI EDVQG+N L NFHGMDLT DK+ MVKKWQT+IEA++DVKTTDGY+LR+
Sbjct: 78 EVAFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRL 137
Query: 437 FCIGFTNKDTLSQRKTCYAQHTQVRAIRKKMCEIITRDVTSSELR 571
FC+GFT K RKT YAQH QVR IRKKM EI+TR+V +++L+
Sbjct: 138 FCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLK 182
>UniRef50_A7NWS5 Cluster: Chromosome chr5 scaffold_2, whole genome
shotgun sequence; n=3; core eudicotyledons|Rep:
Chromosome chr5 scaffold_2, whole genome shotgun
sequence - Vitis vinifera (Grape)
Length = 656
Score = 235 bits (576), Expect = 4e-61
Identities = 112/163 (68%), Positives = 132/163 (80%)
Frame = +2
Query: 83 DPFTRKDWYDVKAPSMFTKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADSDAER 262
DPF +KDWYD+KAPS+F R VG TLV+RTQGTKIASEGLK RVFE+SLADLQAD D +
Sbjct: 417 DPFAKKDWYDIKAPSVFEVRNVGKTLVSRTQGTKIASEGLKHRVFEISLADLQADED--Q 474
Query: 263 SFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFC 442
++RK RL AEDVQGRNVL NF GMD TTDKLR +V+KWQTLIEA++DVKTTD Y LR+FC
Sbjct: 475 AYRKIRLRAEDVQGRNVLTNFWGMDFTTDKLRSLVRKWQTLIEAHVDVKTTDNYTLRLFC 534
Query: 443 IGFTNKDTLSQRKTCYAQHTQVRAIRKKMCEIITRDVTSSELR 571
I FT K +KTCYAQ +Q+R IR+KM EI+T TS +L+
Sbjct: 535 IAFTKKRVNQNKKTCYAQSSQIRQIRRKMREIMTNMATSCDLK 577
>UniRef50_Q54ZW5 Cluster: 40S ribosomal protein S3A; n=2;
Dictyostelium discoideum|Rep: 40S ribosomal protein S3A
- Dictyostelium discoideum AX4
Length = 273
Score = 205 bits (501), Expect = 5e-52
Identities = 101/168 (60%), Positives = 131/168 (77%), Gaps = 4/168 (2%)
Frame = +2
Query: 80 VDPFTRKDWYDVKAPSMFTK----RQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQAD 247
VDPFTRK+WY V+AP+ F K +VG T VNRTQGTK+AS+GLKGRV+EVSLAD++
Sbjct: 16 VDPFTRKEWYVVRAPTQFFKSPADNKVGFTPVNRTQGTKLASDGLKGRVYEVSLADMK-- 73
Query: 248 SDAERSFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYV 427
D + FRK +L AE+V+GRNVL NF+GMDLT+DKLR ++ KW TLIE +DVKTTDGY
Sbjct: 74 DDESQVFRKIKLRAEEVEGRNVLTNFYGMDLTSDKLRSLIHKWSTLIECFVDVKTTDGYF 133
Query: 428 LRVFCIGFTNKDTLSQRKTCYAQHTQVRAIRKKMCEIITRDVTSSELR 571
LRVF I FT K ++KT YA+ ++V+AIRKKM +I+T V+S++L+
Sbjct: 134 LRVFAICFTKKGESQKKKTSYAKTSRVKAIRKKMVDILTETVSSNDLK 181
>UniRef50_Q5EMY6 Cluster: 40S ribosomal protein S1-like protein;
n=9; Dikarya|Rep: 40S ribosomal protein S1-like protein
- Magnaporthe grisea (Rice blast fungus) (Pyricularia
grisea)
Length = 256
Score = 197 bits (481), Expect = 1e-49
Identities = 93/163 (57%), Positives = 121/163 (74%)
Frame = +2
Query: 83 DPFTRKDWYDVKAPSMFTKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADSDAER 262
DPF RKDWY +KAP+ F R VG TLVNR+ G K A++ LKGR+FEVSLADLQ D D
Sbjct: 22 DPFARKDWYGIKAPAPFNIRDVGKTLVNRSSGMKNANDALKGRIFEVSLADLQKDED--H 79
Query: 263 SFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFC 442
+FRK +L ++VQG+N L NFHG+D T+DKLR +V+KWQ+LIEAN+ VKTTD Y+LR+F
Sbjct: 80 AFRKIKLRVDEVQGKNCLTNFHGLDFTSDKLRSLVRKWQSLIEANVTVKTTDDYLLRLFA 139
Query: 443 IGFTNKDTLSQRKTCYAQHTQVRAIRKKMCEIITRDVTSSELR 571
I T + +KT YA +Q+RAIR+KM EII R+ ++ L+
Sbjct: 140 IAVTKRRPNQIKKTTYAASSQIRAIRRKMTEIIQREASTCTLQ 182
>UniRef50_UPI000049A095 Cluster: 40S ribosomal protein S3a; n=3;
Entamoeba histolytica HM-1:IMSS|Rep: 40S ribosomal
protein S3a - Entamoeba histolytica HM-1:IMSS
Length = 257
Score = 180 bits (438), Expect = 2e-44
Identities = 86/164 (52%), Positives = 118/164 (71%)
Frame = +2
Query: 77 IVDPFTRKDWYDVKAPSMFTKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADSDA 256
I +PF++K+WY+VK P F +R VG +VN+T GT+IASE LKGRV EV+LADL +
Sbjct: 22 IAEPFSKKEWYNVKVPKNFKRRTVGQIVVNKTAGTRIASEQLKGRVVEVNLADLMENEKF 81
Query: 257 ERSFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRV 436
KF+ EDV G++ L FHG+ LTTDKLR +VKKW TLIE ++DVKTTDG+++R+
Sbjct: 82 GAYNYKFK--CEDVNGKDCLMIFHGLKLTTDKLRSIVKKWCTLIETSVDVKTTDGHLIRI 139
Query: 437 FCIGFTNKDTLSQRKTCYAQHTQVRAIRKKMCEIITRDVTSSEL 568
FCIGFT++ + +KT YA+ Q++ IRK M +IT++ S EL
Sbjct: 140 FCIGFTSRKSNQIKKTSYAKSAQIKKIRKIMNNLITKEAASREL 183
>UniRef50_Q23DE3 Cluster: Ribosomal S3Ae family protein; n=1;
Tetrahymena thermophila SB210|Rep: Ribosomal S3Ae family
protein - Tetrahymena thermophila SB210
Length = 265
Score = 170 bits (413), Expect = 2e-41
Identities = 77/160 (48%), Positives = 115/160 (71%), Gaps = 3/160 (1%)
Frame = +2
Query: 80 VDPFTRKDWYDVKAPSMFTKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADSDAE 259
+DP +RK+WYD +AP F+ + G TLV ++ G +IASE +KGRV E +LADL+ D+ +
Sbjct: 23 IDPLSRKEWYDFRAPIPFSSKSFGKTLVTKSSGNRIASEEIKGRVVESTLADLK-DNSND 81
Query: 260 RSFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVF 439
+++RK +L+ ++V GRN +F+G+D+T D+L M++KWQTLIEA +D KT DGY++RVF
Sbjct: 82 KAWRKVKLVIDEVDGRNAKTSFYGLDITRDRLCSMIRKWQTLIEARVDCKTNDGYIIRVF 141
Query: 440 CIGFTNKDTL---SQRKTCYAQHTQVRAIRKKMCEIITRD 550
+ FT K + S TCYA+ +QVRAIR+K+ IT +
Sbjct: 142 TLAFTKKTSAGKQSSTSTCYAKSSQVRAIRRKINTFITNE 181
>UniRef50_Q9U4U0 Cluster: Antigen; n=10; Trypanosomatidae|Rep:
Antigen - Leishmania major
Length = 264
Score = 163 bits (395), Expect = 3e-39
Identities = 69/163 (42%), Positives = 110/163 (67%)
Frame = +2
Query: 83 DPFTRKDWYDVKAPSMFTKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADSDAER 262
+ RK+WYDV AP+ F KRQ T+ N+TQGT+IA++ L+GRVFE +LADL + E
Sbjct: 23 ETMARKEWYDVVAPANFEKRQFAKTICNKTQGTRIAADVLRGRVFEANLADLNQSAGEEE 82
Query: 263 SFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFC 442
++RK R ++VQGRN+L FH M++TTDK+ +++KW T +E ++VKT DGY +R+F
Sbjct: 83 AYRKVRFTVQEVQGRNLLTQFHSMEVTTDKMANLLRKWCTTMETTVEVKTADGYTMRLFV 142
Query: 443 IGFTNKDTLSQRKTCYAQHTQVRAIRKKMCEIITRDVTSSELR 571
+ FT Q + CYA+ V+ +R ++ ++I R ++ +++
Sbjct: 143 VAFTKPQANQQSRNCYAKQRLVKWLRMRITKMIKRRLSKVQIK 185
>UniRef50_A0CCR3 Cluster: Chromosome undetermined scaffold_168,
whole genome shotgun sequence; n=4; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_168,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 291
Score = 161 bits (390), Expect = 1e-38
Identities = 73/163 (44%), Positives = 110/163 (67%)
Frame = +2
Query: 80 VDPFTRKDWYDVKAPSMFTKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADSDAE 259
+DP RK+W+++ AP F G T +N++ GT +A+E +KGRV E SLADLQ SD +
Sbjct: 19 IDPLARKEWFELTAPVPFAAGGFGYTCINKSAGTVVATEAIKGRVVEASLADLQGQSD-Q 77
Query: 260 RSFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVF 439
++RK +LI +DV+G +F+G+D T DK+ M+KK QTLIE ++ ++ DGY+LR+F
Sbjct: 78 MAWRKVKLIIDDVEGTRCRTSFYGLDSTKDKIFGMIKKRQTLIETQVEARSQDGYILRIF 137
Query: 440 CIGFTNKDTLSQRKTCYAQHTQVRAIRKKMCEIITRDVTSSEL 568
I FT QRKT YAQ +Q++ IRKK+ EI+ ++V+ +
Sbjct: 138 VIAFTKSIKNQQRKTTYAQRSQIKDIRKKIVEIVLKEVSKKSI 180
>UniRef50_UPI000041A636 Cluster: PREDICTED: similar to ribosomal
protein S3a isoform 5; n=18; Eutheria|Rep: PREDICTED:
similar to ribosomal protein S3a isoform 5 - Homo
sapiens
Length = 211
Score = 134 bits (325), Expect = 1e-30
Identities = 69/114 (60%), Positives = 85/114 (74%)
Frame = +2
Query: 77 IVDPFTRKDWYDVKAPSMFTKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADSDA 256
+VDPF++KDWYDV AP+MF R +G TLV RTQGTKIAS+ GRVFEVSLADLQ D
Sbjct: 21 VVDPFSKKDWYDVNAPAMFNIRNIGKTLVTRTQGTKIASD---GRVFEVSLADLQND--- 74
Query: 257 ERSFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTD 418
E +FRKF+LI EDVQG+N L NFHG+DLT+DK+ ++K I +V+T D
Sbjct: 75 EVAFRKFKLITEDVQGKNCLTNFHGVDLTSDKITSQIRKKMMEIMTR-EVQTND 127
>UniRef50_UPI00005042B8 Cluster: UPI00005042B8 related cluster; n=1;
Rattus norvegicus|Rep: UPI00005042B8 UniRef100 entry -
Rattus norvegicus
Length = 237
Score = 126 bits (305), Expect = 3e-28
Identities = 73/142 (51%), Positives = 91/142 (64%), Gaps = 1/142 (0%)
Frame = +2
Query: 95 RKDWYDVKAPSMFTKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADSDAERSFRK 274
+KD YDVKA +MF R +G T V R Q TK+ S GL G VFE SLA LQ D RK
Sbjct: 12 KKDRYDVKALTMFNVRNIGKTQVLRKQETKMVSVGLNGLVFEASLASLQNDKVV---VRK 68
Query: 275 FRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGF- 451
F+LI ED++G+N L N +GMDLT DK V KWQ ++EA+ DVKT D Y+L +FC+G+
Sbjct: 69 FKLITEDMRGKNGLTNSYGMDLTWDKRCNKVIKWQ-MVEAHADVKTADYYLLCLFCVGYT 127
Query: 452 TNKDTLSQRKTCYAQHTQVRAI 517
TN T R+ AQ+ QV I
Sbjct: 128 TNVTTRYARQLVCAQYQQVHQI 149
>UniRef50_UPI00015608D3 Cluster: PREDICTED: similar to ribosomal
protein S3a; n=1; Equus caballus|Rep: PREDICTED: similar
to ribosomal protein S3a - Equus caballus
Length = 153
Score = 119 bits (286), Expect = 6e-26
Identities = 58/90 (64%), Positives = 69/90 (76%)
Frame = +2
Query: 80 VDPFTRKDWYDVKAPSMFTKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADSDAE 259
VD ++KDWYD+KAP+MF R +G TLV RTQGTKIAS+GLKG VFE+SLADLQ D E
Sbjct: 22 VDQISKKDWYDMKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGGVFEMSLADLQND---E 78
Query: 260 RSFRKFRLIAEDVQGRNVLCNFHGMDLTTD 349
+FRKF+LI EDVQG+ L NF M L+ D
Sbjct: 79 VAFRKFKLITEDVQGKRCLINFRSMGLSCD 108
>UniRef50_A3F4R3 Cluster: Ribosomal protein S3a; n=1; Taenia
asiatica|Rep: Ribosomal protein S3a - Taenia asiatica
(Asian tapeworm)
Length = 183
Score = 119 bits (286), Expect = 6e-26
Identities = 56/102 (54%), Positives = 73/102 (71%)
Frame = +2
Query: 266 FRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCI 445
FRKF+L EDVQGR+ L NFHGMDLT DKL MV KWQ+ IEA++DVKTTDGY LR F I
Sbjct: 7 FRKFKLQVEDVQGRHCLTNFHGMDLTHDKLCGMVLKWQSTIEAHVDVKTTDGYTLRFFVI 66
Query: 446 GFTNKDTLSQRKTCYAQHTQVRAIRKKMCEIITRDVTSSELR 571
FT K Q+ YAQ T+++ +R ++ E++ R+V +L+
Sbjct: 67 AFTKKQE-DQKSHAYAQTTRIKKLRAEIVEVVQREVARCDLK 107
>UniRef50_Q7QT21 Cluster: GLP_675_17761_17015; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_675_17761_17015 - Giardia lamblia
ATCC 50803
Length = 248
Score = 118 bits (285), Expect = 7e-26
Identities = 57/157 (36%), Positives = 91/157 (57%)
Frame = +2
Query: 83 DPFTRKDWYDVKAPSMFTKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADSDAER 262
DP+ +K+WY V AP+ F R +G T V +T G ++A++ + RV+EV+L DL ++
Sbjct: 20 DPYLKKEWYPVIAPAHFKSRHIGQTPVTKTAGLRVATDVINHRVYEVNLGDLNPGAEDLN 79
Query: 263 SFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFC 442
KF L + V L NFHGMD+T K + +K I+ +D+ TTDGY+LRVF
Sbjct: 80 GNTKFYLQTQLVSDGKCLTNFHGMDITRHKYGSLFRKGCDCIDVFMDIPTTDGYLLRVFV 139
Query: 443 IGFTNKDTLSQRKTCYAQHTQVRAIRKKMCEIITRDV 553
I FT++ +RK C+ + +R +R + E + ++
Sbjct: 140 IAFTDRFRFQRRKNCHVKGRVIRMMRAGIYETLHNEL 176
>UniRef50_A2FDS0 Cluster: Ribosomal protein S3Ae, putative; n=4;
Trichomonas vaginalis G3|Rep: Ribosomal protein S3Ae,
putative - Trichomonas vaginalis G3
Length = 247
Score = 105 bits (253), Expect = 6e-22
Identities = 61/156 (39%), Positives = 92/156 (58%), Gaps = 2/156 (1%)
Frame = +2
Query: 83 DPFTRKDWYDVKAPSMFT-KRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQAD-SDA 256
D F +K+W V P+ FT KR +G T+ N+ ++ + + RV+E+S AD+ D S A
Sbjct: 18 DSFIKKEWRHVLVPAYFTGKRDIGVTVSNKCARGRVPMDYVNNRVWELSHADMVNDLSHA 77
Query: 257 ERSFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRV 436
R F +R IA G V F GM LT DKL +++K++T+I+A++D KT DG++LR+
Sbjct: 78 YRLF-SWRSIAA---GSEVYTQFAGMRLTHDKLDSIMRKYRTMIDASVDAKTADGFILRL 133
Query: 437 FCIGFTNKDTLSQRKTCYAQHTQVRAIRKKMCEIIT 544
F IGFT K S + YA + R +R M + +T
Sbjct: 134 FTIGFTKKLANSHKNHTYANSHKARQVRDVMIKALT 169
>UniRef50_Q9AW90 Cluster: 40S ribosomal Protein S3a; n=1; Guillardia
theta|Rep: 40S ribosomal Protein S3a - Guillardia theta
(Cryptomonas phi)
Length = 219
Score = 94.7 bits (225), Expect = 1e-18
Identities = 49/163 (30%), Positives = 88/163 (53%)
Frame = +2
Query: 83 DPFTRKDWYDVKAPSMFTKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADSDAER 262
D +R++ V AP +F + +G TL+ + + + ++++VSLAD+ E
Sbjct: 19 DVNSRQELIKVYAPDIFDSKLIGKTLIKKRNPAD-ENSSVDNKIYQVSLADILGKE--EF 75
Query: 263 SFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFC 442
S F + + FHG+ LT DK+ ++KKW TLIE ++ KT DGY L++F
Sbjct: 76 SSINFNFKSLKIFNNECFTKFHGLTLTRDKICSLIKKWHTLIEVEVNFKTKDGYFLKLFL 135
Query: 443 IGFTNKDTLSQRKTCYAQHTQVRAIRKKMCEIITRDVTSSELR 571
I + K + KT Y +Q RA+R+++ +II ++ + +++
Sbjct: 136 IAQSKKPKNMKSKTVYINSSQKRALRRRITDIIIKEGINMDIK 178
>UniRef50_Q8SS05 Cluster: 40S RIBOSOMAL PROTEIN S3A; n=1;
Encephalitozoon cuniculi|Rep: 40S RIBOSOMAL PROTEIN S3A
- Encephalitozoon cuniculi
Length = 189
Score = 94.7 bits (225), Expect = 1e-18
Identities = 47/122 (38%), Positives = 74/122 (60%)
Frame = +2
Query: 206 GRVFEVSLADLQADSDAERSFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTL 385
GR ++V+ ADL ++D RKF D++G + F GM+LT+DK + M+KKW TL
Sbjct: 15 GRRYDVNQADLTGNNDV--GHRKFIFKIGDIKGSECVGFFDGMELTSDKHKAMIKKWHTL 72
Query: 386 IEANIDVKTTDGYVLRVFCIGFTNKDTLSQRKTCYAQHTQVRAIRKKMCEIITRDVTSSE 565
IEA D+ DG V RVF +G T + +KTCY +H+ + IRK M ++I +++ +
Sbjct: 73 IEAQKDIVAKDGSVFRVFVMGVTRRHPGYVKKTCYVKHSDEKKIRKIMFDVIEEELSGCD 132
Query: 566 LR 571
++
Sbjct: 133 VQ 134
>UniRef50_Q0W2K9 Cluster: 30S ribosomal protein S3AE; n=2;
Euryarchaeota|Rep: 30S ribosomal protein S3AE -
Uncultured methanogenic archaeon RC-I
Length = 225
Score = 71.7 bits (168), Expect = 1e-11
Identities = 51/156 (32%), Positives = 81/156 (51%)
Frame = +2
Query: 80 VDPFTRKDWYDVKAPSMFTKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADSDAE 259
VD F K+WY V AP+ F + +G TL + G I GRV E +L D+ D +
Sbjct: 9 VDAFRAKNWYQVIAPAEFNRANIGETLAD-DPGKMI------GRVMESTLGDVTGDWTKQ 61
Query: 260 RSFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVF 439
FR+ E++ G + +F G +LT D +R +VK+ + I+AN+ V T DG+ +RV
Sbjct: 62 NIKMIFRI--EEIGGNSAYTSFLGHELTRDYMRSLVKRRTSKIDANVVVTTKDGFKVRVK 119
Query: 440 CIGFTNKDTLSQRKTCYAQHTQVRAIRKKMCEIITR 547
I T K A+ +Q+ +IR+ M ++ +
Sbjct: 120 PIVLTVK---------RARTSQIESIRQIMINVVNK 146
>UniRef50_Q8Q0F2 Cluster: 30S ribosomal protein S3Ae; n=6;
Euryarchaeota|Rep: 30S ribosomal protein S3Ae -
Methanosarcina mazei (Methanosarcina frisia)
Length = 204
Score = 69.7 bits (163), Expect = 4e-11
Identities = 49/162 (30%), Positives = 87/162 (53%)
Frame = +2
Query: 80 VDPFTRKDWYDVKAPSMFTKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADSDAE 259
+D + K+WY+++AP+ + VGTT+ L GR E ++ +L +D
Sbjct: 10 LDGWKSKEWYNIEAPAYLNRVIVGTTMAGDPSL-------LVGRNVETTVGELT--NDMT 60
Query: 260 RSFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVF 439
++ K L +V G + G +LTTD +R +VK+ + I+AN+DV+T DG+V+RV
Sbjct: 61 KNNTKVILRVNNVVGDIATTDLMGHELTTDYVRSIVKRQTSRIDANVDVRTKDGFVIRVK 120
Query: 440 CIGFTNKDTLSQRKTCYAQHTQVRAIRKKMCEIITRDVTSSE 565
FT K A+ +Q++AIR+ M +I+ + + ++
Sbjct: 121 PTCFTIK---------RARSSQMQAIREMMVDIVKKRASETD 153
>UniRef50_Q8TVD1 Cluster: 30S ribosomal protein S3Ae; n=1;
Methanopyrus kandleri|Rep: 30S ribosomal protein S3Ae -
Methanopyrus kandleri
Length = 211
Score = 66.5 bits (155), Expect = 4e-10
Identities = 52/153 (33%), Positives = 74/153 (48%)
Frame = +2
Query: 83 DPFTRKDWYDVKAPSMFTKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADSDAER 262
D + K WY + AP MF +VG T + E + GRV E +L D+ D
Sbjct: 4 DKWKDKVWYTILAPDMFDNVEVGETPADDP-------EKVIGRVLETTLGDVLDDITKHH 56
Query: 263 SFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFC 442
FR+ DV+G F G L D +R +V++ + I+ IDV T DGY +RV
Sbjct: 57 IKVFFRIY--DVEGTTAYSKFEGHRLMRDYVRSLVRRGTSRIDGVIDVVTKDGYKVRVAG 114
Query: 443 IGFTNKDTLSQRKTCYAQHTQVRAIRKKMCEII 541
+ FT T A+ +Q RAIRK+M ++I
Sbjct: 115 LAFT---------TRRAKTSQQRAIRKEMFKVI 138
>UniRef50_A7D401 Cluster: Ribosomal protein S3Ae; n=2;
Halorubrum|Rep: Ribosomal protein S3Ae - Halorubrum
lacusprofundi ATCC 49239
Length = 215
Score = 62.5 bits (145), Expect = 7e-09
Identities = 45/147 (30%), Positives = 70/147 (47%)
Frame = +2
Query: 95 RKDWYDVKAPSMFTKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADSDAERSFRK 274
+K WY V AP F ++++G TL + + GR +L +L DS A +
Sbjct: 12 QKRWYSVLAPEQFDRQELGETLAEEP-------DQVVGRTITTTLGELTGDSGANNTKLT 64
Query: 275 FRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFT 454
F++ DV F +LT D LR +V++ + +EA+I V TTD Y +RV + T
Sbjct: 65 FKIT--DVGSDTAYTEFIKYELTRDYLRSLVRRGASKVEASITVLTTDDYRIRVQPVALT 122
Query: 455 NKDTLSQRKTCYAQHTQVRAIRKKMCE 535
K A +Q +AIR+ M +
Sbjct: 123 TKK---------ADRSQEKAIRRVMID 140
>UniRef50_O27964 Cluster: 30S ribosomal protein S3Ae; n=1;
Archaeoglobus fulgidus|Rep: 30S ribosomal protein S3Ae -
Archaeoglobus fulgidus
Length = 211
Score = 62.5 bits (145), Expect = 7e-09
Identities = 48/161 (29%), Positives = 77/161 (47%)
Frame = +2
Query: 77 IVDPFTRKDWYDVKAPSMFTKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADSDA 256
+ D +T K W+ + AP F ++G T + +K+ GR E +LA+L D
Sbjct: 10 VKDKWTLKKWFTLIAPEYFGMAELGETPAD--DASKVV-----GRTVETTLAELTNDYSN 62
Query: 257 ERSFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRV 436
+ +++K V G N F +LT + L + ++ + IE +DV T DGY LRV
Sbjct: 63 QNTYKKLIFKVYRVAGDNAYTKFWRFELTREYLNSLTRRRTSKIEDIVDVTTADGYKLRV 122
Query: 437 FCIGFTNKDTLSQRKTCYAQHTQVRAIRKKMCEIITRDVTS 559
+ F T+ + KT +Q RAIR M +I+ +S
Sbjct: 123 KSVVF----TVRRCKT-----SQKRAIRAIMRQIVVEKASS 154
>UniRef50_Q8ZT21 Cluster: 30S ribosomal protein S3Ae; n=4;
Pyrobaculum|Rep: 30S ribosomal protein S3Ae -
Pyrobaculum aerophilum
Length = 221
Score = 61.3 bits (142), Expect = 2e-08
Identities = 45/152 (29%), Positives = 70/152 (46%)
Frame = +2
Query: 83 DPFTRKDWYDVKAPSMFTKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADSDAER 262
DP+ K W+ V APS + N Q L R EVSL D+ D
Sbjct: 20 DPWALKKWFSVYAPSYLGGVFLAEVPANEAQK-------LLMRTLEVSLYDITKDISHLP 72
Query: 263 SFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFC 442
KF++ V+G L F G++LT D +R +V+K + + A +VKT DG V+R+
Sbjct: 73 IKLKFQI--HRVEGLKALTRFKGLELTRDYIRSLVRKGTSKVTAITEVKTKDGMVMRIAV 130
Query: 443 IGFTNKDTLSQRKTCYAQHTQVRAIRKKMCEI 538
+G T + +K+ + + + KK E+
Sbjct: 131 LGITTHRIGTAQKSA-MRKKMIETLVKKAAEL 161
>UniRef50_Q3SAA8 Cluster: SSU ribosomal protein S3AE; n=2;
environmental samples|Rep: SSU ribosomal protein S3AE -
uncultured euryarchaeote Alv-FOS1
Length = 227
Score = 59.7 bits (138), Expect = 5e-08
Identities = 50/164 (30%), Positives = 80/164 (48%), Gaps = 3/164 (1%)
Frame = +2
Query: 83 DPFTRKDWYDVKAPSMFTKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADSDAER 262
D + K WY + P F+ +++G T + K+ GRV E +L DL +
Sbjct: 15 DKWRSKVWYTIITPETFSSKEIGMTPADDPD--KVI-----GRVAESTLYDLSGNFKKMH 67
Query: 263 SFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFC 442
F++ VQG N F G D+TTD +R M+++ ++ I+ +V+T+DGY +RV
Sbjct: 68 VKLYFKI--NRVQGTNAYTRFIGHDMTTDYIRRMIRRRRSRIDMIFNVETSDGYRMRVKV 125
Query: 443 IGFTNKDTLSQRKTCYAQHTQVRAIRKKMCEIIT---RDVTSSE 565
+ ++ S KT IRKK+ E +T R +T SE
Sbjct: 126 LTVPDRRIKSSIKT---------EIRKKIQEYLTEKARAMTFSE 160
>UniRef50_Q9YCV8 Cluster: 30S ribosomal protein S3Ae; n=12;
Archaea|Rep: 30S ribosomal protein S3Ae - Aeropyrum
pernix
Length = 214
Score = 59.3 bits (137), Expect = 6e-08
Identities = 49/164 (29%), Positives = 76/164 (46%)
Frame = +2
Query: 77 IVDPFTRKDWYDVKAPSMFTKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADSDA 256
I D + K W+ V AP +F + +GTT + + L GRV E +L D+ D
Sbjct: 6 IRDTWRLKKWFKVVAPPLFGETVLGTTPADDP-------DKLIGRVMETTLFDITGDYSY 58
Query: 257 ERSFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRV 436
F+++ V+G F G +L D +R + ++ + + +V T DGY LRV
Sbjct: 59 VHVKMYFQVVR--VEGDTAYTRFKGHELLRDYIRGLTRRKSSKVTGIFNVWTKDGYGLRV 116
Query: 437 FCIGFTNKDTLSQRKTCYAQHTQVRAIRKKMCEIITRDVTSSEL 568
+ FT R+ C + +Q AIRK M EI+ + S L
Sbjct: 117 TAMAFT-------RQRC--KTSQKSAIRKVMQEIVEQKARESTL 151
>UniRef50_Q6LZG0 Cluster: 30S ribosomal protein S3Ae; n=6;
Methanococcales|Rep: 30S ribosomal protein S3Ae -
Methanococcus maripaludis
Length = 225
Score = 58.0 bits (134), Expect = 1e-07
Identities = 39/134 (29%), Positives = 61/134 (45%)
Frame = +2
Query: 83 DPFTRKDWYDVKAPSMFTKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADSDAER 262
D + K WYD+ P F +G T N L GR+ E+SL DL +
Sbjct: 17 DTWKSKVWYDIYTPQSFGGDVIGQTPANDPAN-------LIGRISEISLRDLTNEHSKHM 69
Query: 263 SFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFC 442
+ F++ + V G N F G D T + L+ V++ ++ I A ++V+T DG+ +RV
Sbjct: 70 TRMYFKV--DGVSGNNATSQFVGHDTTREYLKSQVRRRRSKINAIVEVRTKDGFKVRVKA 127
Query: 443 IGFTNKDTLSQRKT 484
+ T KT
Sbjct: 128 LVLTAVRARDHHKT 141
>UniRef50_Q5V296 Cluster: 30S ribosomal protein S3Ae; n=4;
Halobacteriaceae|Rep: 30S ribosomal protein S3Ae -
Haloarcula marismortui (Halobacterium marismortui)
Length = 213
Score = 54.4 bits (125), Expect = 2e-06
Identities = 40/149 (26%), Positives = 70/149 (46%)
Frame = +2
Query: 95 RKDWYDVKAPSMFTKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADSDAERSFRK 274
+K WY V+AP F + +G T + + GR E +L +L D+ +
Sbjct: 12 QKRWYTVQAPEQFDREVLGKTPAEEP-------DKVLGRTIETTLGELTNDASENNTKLT 64
Query: 275 FRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFT 454
F++ +V + F +LT D LR +V++ + +EA I V TTD Y +++ + T
Sbjct: 65 FKI--NEVASDSAYTEFIRHELTRDYLRSLVRRGSSKVEAYITVLTTDDYRVQIQPVAVT 122
Query: 455 NKDTLSQRKTCYAQHTQVRAIRKKMCEII 541
K A +Q +AIR+ M +++
Sbjct: 123 TKK---------ADASQEKAIRRTMIDLV 142
>UniRef50_A7QAT4 Cluster: Chromosome chr5 scaffold_72, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr5 scaffold_72, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 168
Score = 52.4 bits (120), Expect = 7e-06
Identities = 34/96 (35%), Positives = 53/96 (55%)
Frame = -2
Query: 304 SLDILSDKSELAERPFRITISLEISKGDLKNTPL*TLRCNFCSLGAIDKGGAHLSLGEHG 125
SL +L +S+L I I L IS+G+LK++ L R + S + +KG A++S E
Sbjct: 61 SLHVLGSQSDLPVG--MILIVLNISQGNLKHSVLEPFRGDLGSQSSANKGFANISDAEDR 118
Query: 124 RRFNIVPVFTGERINNLLLNTLLASFRKAFIFTDRH 17
RR N++PV +R+ LLL++L +F D H
Sbjct: 119 RRLNVIPVLLSKRVGCLLLSSLF-PLGNPLVFPDDH 153
>UniRef50_A5UKY8 Cluster: Small subunit ribosomal protein S3Ae; n=2;
Methanobacteriaceae|Rep: Small subunit ribosomal protein
S3Ae - Methanobrevibacter smithii (strain PS / ATCC
35061 / DSM 861)
Length = 193
Score = 52.0 bits (119), Expect = 1e-05
Identities = 35/133 (26%), Positives = 62/133 (46%)
Frame = +2
Query: 83 DPFTRKDWYDVKAPSMFTKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADSDAER 262
D + K WY +K P F +++G T + L GR EV++ +L D +
Sbjct: 12 DTWKEKSWYTIKTPVNFEDKEIGETPARDP-------DYLIGRGVEVTMRELSGDFS--K 62
Query: 263 SFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFC 442
+ K R ++V G F G TTD +R M+++ + I+A+ VKT D +++
Sbjct: 63 QYIKLRFEIDNVAGDVANTKFTGHKTTTDYVRSMIRRGTSRIDASSVVKTKDDRKVKLHV 122
Query: 443 IGFTNKDTLSQRK 481
+ T + S ++
Sbjct: 123 LAVTTRRAKSSQQ 135
>UniRef50_A4GI78 Cluster: Ribosomal protein S3AE; n=1; uncultured
marine bacterium HF10_29C11|Rep: Ribosomal protein S3AE
- uncultured marine bacterium HF10_29C11
Length = 322
Score = 50.8 bits (116), Expect = 2e-05
Identities = 34/127 (26%), Positives = 65/127 (51%), Gaps = 1/127 (0%)
Frame = +2
Query: 83 DPFTRKDWYDVKAPSM-FTKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADSDAE 259
D + K WY ++AP + + +G T+ + E + GR++E++ + D
Sbjct: 21 DKWKTKRWYTIRAPRHPWNYQNIGETIGE-------SDEHIIGRIYEMTQQEFNGDFTKM 73
Query: 260 RSFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVF 439
+FR ++E V G++ L F G T+ +R +++++ I+ IDV T DGY++R+
Sbjct: 74 HVMLRFR-VSETV-GQDALTTFVGHHHQTNHIRRQIRRYRGKIDDVIDVVTEDGYLVRIK 131
Query: 440 CIGFTNK 460
+ T K
Sbjct: 132 PLIITQK 138
>UniRef50_A4YCU2 Cluster: Ribosomal protein S3Ae; n=1;
Metallosphaera sedula DSM 5348|Rep: Ribosomal protein
S3Ae - Metallosphaera sedula DSM 5348
Length = 216
Score = 50.4 bits (115), Expect = 3e-05
Identities = 32/124 (25%), Positives = 57/124 (45%)
Frame = +2
Query: 83 DPFTRKDWYDVKAPSMFTKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADSDAER 262
D + K W+ + +P +F + +G+T T GR E +L DL D
Sbjct: 16 DKWKMKKWFSIYSPKVFGEVSLGSTPAFDVSQTM-------GRKVETTLYDLTGDFSTVY 68
Query: 263 SFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFC 442
F+++ + G + F G +L+ D +R +V++ + I +D+ T DG+ LRV
Sbjct: 69 VHLYFKVVRNE--GERLFTEFAGHELSRDYVRSLVRRKSSKINKVVDITTKDGFTLRVKT 126
Query: 443 IGFT 454
+ T
Sbjct: 127 LALT 130
>UniRef50_A2SQ57 Cluster: Ribosomal protein S3Ae; n=1;
Methanocorpusculum labreanum Z|Rep: Ribosomal protein
S3Ae - Methanocorpusculum labreanum (strain ATCC 43576 /
DSM 4855 / Z)
Length = 206
Score = 48.4 bits (110), Expect = 1e-04
Identities = 41/145 (28%), Positives = 68/145 (46%), Gaps = 2/145 (1%)
Frame = +2
Query: 80 VDPFTRKDWYDVKAPSMFTKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADSDAE 259
V+ + K+WY V AP K+ +G + + E + GRV VSL +L D +
Sbjct: 12 VEGWKAKNWYKVHAPEFLGKQFIGEIISSNP-------ENVPGRVLTVSLGELIQDYSKQ 64
Query: 260 RSFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDG-YVLRV 436
F+++ +V G F+G ++T + +R MVKK + +++ I V L+V
Sbjct: 65 NVRASFKIM--NVAGDAAYTQFNGHEMTKEFVRAMVKKRASRVDSTITVTPLGSTRELQV 122
Query: 437 FCIGFT-NKDTLSQRKTCYAQHTQV 508
FT N LSQ + A+ +V
Sbjct: 123 TITAFTINHARLSQVQELRAKMVKV 147
>UniRef50_A0RTS7 Cluster: Ribosomal protein S3AE; n=2;
Thermoprotei|Rep: Ribosomal protein S3AE - Cenarchaeum
symbiosum
Length = 203
Score = 46.8 bits (106), Expect = 4e-04
Identities = 34/135 (25%), Positives = 62/135 (45%)
Frame = +2
Query: 77 IVDPFTRKDWYDVKAPSMFTKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADSDA 256
+ D + K W + AP F V V T + KGRV EV+L D+
Sbjct: 8 VKDKWRDKRWITIHAPDSFNS--VPAARVPITD-----DKHAKGRVIEVTLFDILKGDPQ 60
Query: 257 ERSFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRV 436
+ +++ + I + V + F + + + LR +V++ + + +DVKT+DGYV R+
Sbjct: 61 QNNYKIYFQI-DKVSEESATSIFKRYEYSKEYLRSLVRRGSSKVNYIVDVKTSDGYVFRL 119
Query: 437 FCIGFTNKDTLSQRK 481
+ T + + +K
Sbjct: 120 KVLALTYRHLNTSKK 134
>UniRef50_Q3LW71 Cluster: Ribosomal protein S3a; n=1; Bigelowiella
natans|Rep: Ribosomal protein S3a - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 215
Score = 46.4 bits (105), Expect = 5e-04
Identities = 34/143 (23%), Positives = 66/143 (46%)
Frame = +2
Query: 98 KDWYDVKAPSMFTKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADSDAERSFRKF 277
K+W V AP +F + +G + N+ + + R EVSL++L +D ++
Sbjct: 25 KEWKIVIAPKIFEYKIIGYIINNKYTNNSGRLKEISKRNLEVSLSELI--NDYSSYYKII 82
Query: 278 RLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTN 457
+L + + F+G L+ D + MV K L+E +I + T V+ +F + +T
Sbjct: 83 KLQPYTMNKMFIRTTFNGFRLSYDFIFSMVLKPTKLVEFSIKINTLKKKVVEIFVL-YTI 141
Query: 458 KDTLSQRKTCYAQHTQVRAIRKK 526
L Y + +++R I ++
Sbjct: 142 TKNLHSNSITYGKRSRIRKINRE 164
>UniRef50_A4D1I1 Cluster: Similar to ribosomal protein S3a; 40S
ribosomal protein S3a; v-fos transformation effector
protein 1; n=2; Eutheria|Rep: Similar to ribosomal
protein S3a; 40S ribosomal protein S3a; v-fos
transformation effector protein 1 - Homo sapiens (Human)
Length = 119
Score = 41.1 bits (92), Expect = 0.018
Identities = 15/27 (55%), Positives = 21/27 (77%)
Frame = +2
Query: 77 IVDPFTRKDWYDVKAPSMFTKRQVGTT 157
++D F++KDWYDVKA +MF R +G T
Sbjct: 21 VIDQFSKKDWYDVKALAMFNIRNIGKT 47
>UniRef50_Q6KYU3 Cluster: 30S ribosomal protein S3Ae; n=2;
Thermoplasmatales|Rep: 30S ribosomal protein S3Ae -
Picrophilus torridus
Length = 209
Score = 40.3 bits (90), Expect = 0.031
Identities = 31/117 (26%), Positives = 53/117 (45%), Gaps = 1/117 (0%)
Frame = +2
Query: 83 DPFTRKDWYDVKAPSMFTKRQVGTTLVNRTQGTKIASEGLK-GRVFEVSLADLQADSDAE 259
D + K WY + APS +R++ + A L GR EV ++D +
Sbjct: 11 DKWKEKTWYTIVAPSFLGEREIAL--------SPAADPSLMIGRKVEVPVSDFTGNFRKS 62
Query: 260 RSFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVL 430
+ FR+ ++ G+ F G ++ D +R MV++ + I+ + KT DGY L
Sbjct: 63 STMVIFRV--KECTGKRCTTEFIGHKVSDDTIRRMVRRRKERIDIIMPSKTKDGYRL 117
>UniRef50_Q978Z2 Cluster: 30S ribosomal protein S3Ae; n=2;
Thermoplasma|Rep: 30S ribosomal protein S3Ae -
Thermoplasma volcanium
Length = 215
Score = 38.7 bits (86), Expect = 0.096
Identities = 31/133 (23%), Positives = 58/133 (43%)
Frame = +2
Query: 83 DPFTRKDWYDVKAPSMFTKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADSDAER 262
+ + K WY V+AP ++V L S + RV EV +++L +
Sbjct: 12 EKWKEKVWYTVEAPPYLGSKEVSVALGED-------SNSMVNRVVEVPISELTGNFKKSN 64
Query: 263 SFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFC 442
FR+ + +G F G + D +R +V++ + I+ DVKT+D ++ V
Sbjct: 65 EKALFRIT--NCEGTKCKTIFIGHYIGDDYIRRLVRRRKERIDIIEDVKTSDNSIITVKI 122
Query: 443 IGFTNKDTLSQRK 481
+ T+ + +K
Sbjct: 123 VVVTDGKVTNTKK 135
>UniRef50_Q1DMF8 Cluster: Predicted protein; n=1; Coccidioides
immitis|Rep: Predicted protein - Coccidioides immitis
Length = 628
Score = 33.5 bits (73), Expect = 3.6
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Frame = -3
Query: 441 QKTRRTYPSVVL--TSMLASISVCHFFTIHLSLSVVRSMPWKLQRTLRP 301
QK RRTYP + T + +IS H + + R +PW+L TLRP
Sbjct: 505 QKERRTYPVQISLDTRQIPNISTRHIVSFVHWDAENRRVPWRLAETLRP 553
>UniRef50_Q81B91 Cluster: Putative uncharacterized protein; n=4;
Bacillus cereus group|Rep: Putative uncharacterized
protein - Bacillus cereus (strain ATCC 14579 / DSM 31)
Length = 151
Score = 33.1 bits (72), Expect = 4.8
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 8/68 (11%)
Frame = +2
Query: 245 DSDAERSFRKFRLIAEDVQGRNVLCNFHGMDLTTD-KLRWMVKKWQ-------TLIEANI 400
D ER F+ ++I+ED++ +LC + D+ T+ KL + K + LI N
Sbjct: 71 DVSPERMFQVLQIISEDIERIEMLCKEYEKDMPTEMKLIYDTKSGKFKAEYEYDLIHTND 130
Query: 401 DVKTTDGY 424
D+KT D +
Sbjct: 131 DIKTADDF 138
>UniRef50_A1FFR2 Cluster: General secretion pathway protein GspK
precursor; n=1; Pseudomonas putida W619|Rep: General
secretion pathway protein GspK precursor - Pseudomonas
putida W619
Length = 237
Score = 32.3 bits (70), Expect = 8.3
Identities = 19/81 (23%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Frame = -2
Query: 505 LGMLSVACLALAERILVGETDAENT*DISVSGLNVNVGFNQCLPFLYHPSE---FISGEV 335
+G+LSV LA + + + A + + +GL GFN + +L + G+V
Sbjct: 16 VGLLSVLLGGLAVSVQLQQRQARWQGNQTQAGLAAQAGFNLAVAYLLRDGQARWLADGQV 75
Query: 334 HAVEIAENITSLDILSDKSEL 272
H + A + + ++S++ +L
Sbjct: 76 HVADFAGSTLHISVVSERGKL 96
>UniRef50_A7ANW6 Cluster: Putative uncharacterized protein; n=1;
Babesia bovis|Rep: Putative uncharacterized protein -
Babesia bovis
Length = 1902
Score = 32.3 bits (70), Expect = 8.3
Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 2/97 (2%)
Frame = -2
Query: 316 ENITSLDILSDKSELAERPFRITISLEISKGDLKNTPL*TLRCNFCSLGAIDKGGAHLSL 137
E++ S +I+ D + + RIT+ ++I + T L TLR N ++ ++ +H L
Sbjct: 100 ESLYSPEIVDDLNHIVTSQNRITLLIKIRAINTLTTVLQTLRQNVPTVWEVNSLESHQYL 159
Query: 136 GEHGRRFNIVPVFTGERINNLLLNTLLASF--RKAFI 32
E RF + V NNL +++ S+ RKAFI
Sbjct: 160 CER-FRFISIDVLLQVFNNNLEAPSVVTSYQRRKAFI 195
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 581,371,222
Number of Sequences: 1657284
Number of extensions: 11897191
Number of successful extensions: 31338
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 30359
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31303
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 39154548218
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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