Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_L21
         (483 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A11.05c |kms1||meiotic spindle pole body protein Kms1|Schiz...    25   4.5  
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa...    25   4.5  

>SPAC3A11.05c |kms1||meiotic spindle pole body protein
           Kms1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 607

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = +1

Query: 262 HIDDTTKQRYTYIINTNISLIS*FQPANIYVTIYLKQ 372
           HIDD T++++   ++ N        P+N+   +Y K+
Sbjct: 347 HIDDLTREKHLIALSNNPKGDEFLSPSNLDEMVYSKE 383


>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
           Arp9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 523

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -1

Query: 474 FRVCLITSLTF*FQLTGS 421
           FR CLI  L F +QL+GS
Sbjct: 413 FRECLIQQLQFKYQLSGS 430


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,244,977
Number of Sequences: 5004
Number of extensions: 17517
Number of successful extensions: 44
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 186042952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)