Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_L21
         (483 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_05_0087 - 9036246-9036266,9036518-9036782,9036863-9037033,903...    28   4.5  

>10_05_0087 -
           9036246-9036266,9036518-9036782,9036863-9037033,
           9037259-9037317
          Length = 171

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 13/50 (26%), Positives = 29/50 (58%), Gaps = 4/50 (8%)
 Frame = +3

Query: 249 DVTSTHR*HNQTTLHIYNKHEYFVNILVSTS*HICHYLS----KTAFNLT 386
           D   +HR   +  +++YN++ +++ ++++     CHYL+    K AF+ T
Sbjct: 59  DTLWSHR-EKEYIMYVYNQYAHWILLVITPKWSTCHYLNSRIDKQAFDWT 107


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,259,238
Number of Sequences: 37544
Number of extensions: 113689
Number of successful extensions: 306
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 304
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 306
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 987904180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)