Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_L21
         (483 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF022974-8|AAX22288.1|  289|Caenorhabditis elegans Serpentine re...    27   5.4  
Z81082-4|CAB03096.1|  176|Caenorhabditis elegans Hypothetical pr...    27   9.4  
Z81082-3|CAB03095.2|  603|Caenorhabditis elegans Hypothetical pr...    27   9.4  

>AF022974-8|AAX22288.1|  289|Caenorhabditis elegans Serpentine
           receptor, class sx protein10 protein.
          Length = 289

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -3

Query: 475 FSSLFNHVLNILVPVNRFRC 416
           F S+F   LN + P+NR++C
Sbjct: 59  FGSIFEGALNFMNPMNRYKC 78


>Z81082-4|CAB03096.1|  176|Caenorhabditis elegans Hypothetical
           protein F42G4.3b protein.
          Length = 176

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 10/39 (25%), Positives = 17/39 (43%)
 Frame = +2

Query: 182 PCTRDAHSPRCCVSTAPRALRDGRDVDTSMTQPNNVTHI 298
           PC  D  +PRC + + P   +DG      +   +   H+
Sbjct: 94  PCFHDKFAPRCALCSKPIVPQDGEKESVRVVAMDKSFHV 132


>Z81082-3|CAB03095.2|  603|Caenorhabditis elegans Hypothetical
           protein F42G4.3a protein.
          Length = 603

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 10/39 (25%), Positives = 17/39 (43%)
 Frame = +2

Query: 182 PCTRDAHSPRCCVSTAPRALRDGRDVDTSMTQPNNVTHI 298
           PC  D  +PRC + + P   +DG      +   +   H+
Sbjct: 521 PCFHDKFAPRCALCSKPIVPQDGEKESVRVVAMDKSFHV 559


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,081,706
Number of Sequences: 27780
Number of extensions: 103994
Number of successful extensions: 215
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 215
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 892829112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)