Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_L20
         (491 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces p...    61   1e-10
SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit R...    26   2.7  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   6.2  
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha...    25   6.2  
SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomy...    25   8.2  
SPBC4B4.04 |||translation initiation factor eIF2A |Schizosacchar...    25   8.2  
SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomy...    25   8.2  

>SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 195

 Score = 60.9 bits (141), Expect = 1e-10
 Identities = 39/90 (43%), Positives = 46/90 (51%), Gaps = 3/90 (3%)
 Frame = +1

Query: 67  KSFSKHVRRT--RPNLTPGTVCILLAGRHAGKRXXXXXXXXXXXXXFTGPFAFNACPLRR 240
           K   K VR T  R +L PGTVCILLAGR  GKR              TGP+  N  P+RR
Sbjct: 37  KKARKAVRPTKLRASLAPGTVCILLAGRFRGKR-VVVLSQLEDTLVVTGPYKVNGVPIRR 95

Query: 241 IPQRYVIGTST-KVDLGDFKLPAHLDDAYF 327
           +  RYVI TS  K+D+    +      AYF
Sbjct: 96  VNHRYVIATSAPKIDVSGVSV-EKFTKAYF 124


>SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit
           Rec11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 923

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +2

Query: 164 CSLECCRVVCYSSLDLL 214
           CSLE   +VCYSSL +L
Sbjct: 764 CSLEVGPIVCYSSLKVL 780


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 13/46 (28%), Positives = 20/46 (43%)
 Frame = +1

Query: 22  SFYPTQDKIRCRSHGKSFSKHVRRTRPNLTPGTVCILLAGRHAGKR 159
           +FY      R  SH  S S     ++P LT  +  +L +  H  +R
Sbjct: 422 AFYHNSTSSRSSSHSSSHSLSSLSSKPILTASSSSLLTSSSHTYER 467


>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 276

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -1

Query: 218 KAKGPVKSSRPLGNTPTSTTR 156
           KAK P+KSS+   N P S  R
Sbjct: 3   KAKSPIKSSKKSVNQPKSVLR 23


>SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 421

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 174 SVAEWSATLHWTFCFQRVSPAQDSAAL 254
           S+ ++SA  H   CF   SP Q++ A+
Sbjct: 266 SLIKYSAAAHTRICFAVNSPCQEALAI 292


>SPBC4B4.04 |||translation initiation factor eIF2A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 576

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 15/53 (28%), Positives = 28/53 (52%)
 Frame = +1

Query: 1   ARGKSRKSFYPTQDKIRCRSHGKSFSKHVRRTRPNLTPGTVCILLAGRHAGKR 159
           ARG++  +F   +++I   S G S +KHV  +R  + PG   ++   +   K+
Sbjct: 455 ARGQN-STFSYRREEIDVMSSG-SANKHVNSSRQRVVPGATPVIDGNKKNNKK 505


>SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 667

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -1

Query: 188 PLGNTPTSTTRLPACLPANR 129
           P  N  T  TRLP  +P+NR
Sbjct: 330 PRFNLATGATRLPFAIPSNR 349


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,808,044
Number of Sequences: 5004
Number of extensions: 31484
Number of successful extensions: 92
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 192109570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)