Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_L20
         (491 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0433 - 22891261-22891509,22892181-22892301,22892405-228924...    80   1e-15
04_04_0211 - 23636377-23636532,23636624-23636805,23637853-236379...    73   2e-13
03_05_0412 + 23993452-23994068,23996249-23996350,23996799-239969...    30   1.2  
07_03_1327 + 25833927-25834391,25834943-25835340,25835395-25836331     29   2.0  
04_04_1200 + 31690611-31690914,31690993-31691293,31691391-31696251     27   6.2  

>02_04_0433 -
           22891261-22891509,22892181-22892301,22892405-22892496,
           22892692-22892755,22892855-22892920,22893102-22893193,
           22893991-22894050,22894181-22894270,22894484-22894613,
           22895066-22895157,22895299-22895373,22895663-22895754,
           22896496-22896586,22897541-22897574,22897745-22897791,
           22899110-22899209,22899300-22899436,22900837-22901015,
           22901146-22901188,22901264-22901297,22901839-22901948,
           22902043-22902224,22903062-22903168,22903266-22903480
          Length = 833

 Score = 79.8 bits (188), Expect = 1e-15
 Identities = 47/102 (46%), Positives = 55/102 (53%), Gaps = 1/102 (0%)
 Frame = +1

Query: 25  FYPTQD-KIRCRSHGKSFSKHVRRTRPNLTPGTVCILLAGRHAGKRXXXXXXXXXXXXXF 201
           FYP  D K R  S  K+    +R T   +TPGTV ILLAGR+ GKR              
Sbjct: 50  FYPADDVKPRAPSTRKANPTKLRST---ITPGTVLILLAGRYMGKRVVFLKQLKSGLLLI 106

Query: 202 TGPFAFNACPLRRIPQRYVIGTSTKVDLGDFKLPAHLDDAYF 327
           TGPF  N  P+RR+ Q YVI TSTKVD+   K+    DD YF
Sbjct: 107 TGPFKINGVPIRRVNQAYVIATSTKVDISGVKVD-KFDDKYF 147



 Score = 27.1 bits (57), Expect = 8.2
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +3

Query: 426 RKADQKLVDEAVIKAIRLRPD 488
           +K DQK VD  +IKAI + PD
Sbjct: 177 KKDDQKAVDAELIKAIEVVPD 197


>04_04_0211 -
           23636377-23636532,23636624-23636805,23637853-23637959,
           23637997-23638280
          Length = 242

 Score = 72.5 bits (170), Expect = 2e-13
 Identities = 44/110 (40%), Positives = 56/110 (50%), Gaps = 2/110 (1%)
 Frame = +1

Query: 4   RGKSRKSFYPTQDKIRCRSHGKSFS--KHVRRTRPNLTPGTVCILLAGRHAGKRXXXXXX 177
           R  S +   PT+ +    S+   FS  + +   R ++TPGTV ILLAGR  GKR      
Sbjct: 62  RQPSTRKPNPTKLRSPSSSNLPEFSLFRFILLMRSSITPGTVLILLAGRFMGKRVVFLKQ 121

Query: 178 XXXXXXXFTGPFAFNACPLRRIPQRYVIGTSTKVDLGDFKLPAHLDDAYF 327
                   TGPF  N  P+RR+ Q YVI TSTKVD+    +    DD YF
Sbjct: 122 LKSGLLLVTGPFKINGVPIRRVNQPYVIATSTKVDISGVNV-EKFDDKYF 170



 Score = 28.3 bits (60), Expect = 3.5
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = +3

Query: 420 EQRKADQKLVDEAVIKAIRLRPD 488
           E +K DQK+VD  +IKAI   PD
Sbjct: 198 EFKKEDQKVVDAELIKAIEAVPD 220


>03_05_0412 +
           23993452-23994068,23996249-23996350,23996799-23996994,
           23997075-23997259,23997394-23997498,23997625-23997722,
           23997832-23998067,23998314-23998382,23999768-23999833,
           24000513-24000611,24000688-24000750
          Length = 611

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -1

Query: 251 RCGILRRGHALKAKGPVKSSRPLGNTPTSTT 159
           RCG+ ++GH   A GP  +  P  ++  +TT
Sbjct: 23  RCGLPKKGHVCAAGGPAPTPSPSSSSGAATT 53


>07_03_1327 + 25833927-25834391,25834943-25835340,25835395-25836331
          Length = 599

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = -1

Query: 206 PVKSSRPLGNTPTSTTRLPACLPANRMHTVPGVRLGLVLRTCLL 75
           P  ++ P+ +TP+ T +   CLPA+R  T    R   +LR  L+
Sbjct: 258 PTWTTSPILSTPSHTWQRSLCLPASRSFTPRKSRRDQLLRLALV 301


>04_04_1200 + 31690611-31690914,31690993-31691293,31691391-31696251
          Length = 1821

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 16/36 (44%), Positives = 21/36 (58%)
 Frame = -1

Query: 206 PVKSSRPLGNTPTSTTRLPACLPANRMHTVPGVRLG 99
           P+KS+ P GN    TTRL +   A R+ TV  + LG
Sbjct: 440 PLKSNHPKGNMILVTTRLLSL--AQRIGTVKPIELG 473


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,744,815
Number of Sequences: 37544
Number of extensions: 242464
Number of successful extensions: 637
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 636
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1023611560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)