Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_L20
         (491 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00036-4|AAK29850.1|  217|Caenorhabditis elegans Ribosomal prote...    76   1e-14
Z83102-9|CAI79156.1|   82|Caenorhabditis elegans Hypothetical pr...    30   0.79 
AF036705-8|AAB95169.1|  685|Caenorhabditis elegans Hypothetical ...    29   1.4  
Z81492-4|CAB04031.1|  624|Caenorhabditis elegans Hypothetical pr...    28   3.2  
Z72507-1|CAA96633.2|  172|Caenorhabditis elegans Hypothetical pr...    28   3.2  

>U00036-4|AAK29850.1|  217|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 6 protein.
          Length = 217

 Score = 76.2 bits (179), Expect = 1e-14
 Identities = 39/79 (49%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
 Frame = +1

Query: 97  RPNLTPGTVCILLAGRHAGKRXXXXXXXXXXXXXF-TGPFAFNACPLRRIPQRYVIGTST 273
           R  LTPGTV I+LAGRH GKR               TGP   N  PLRRI Q +VI TS 
Sbjct: 68  RKTLTPGTVLIVLAGRHKGKRVVFLKQLPQSGLLLVTGPHKINGFPLRRIGQAFVIATSL 127

Query: 274 KVDLGDFKLPAHLDDAYFK 330
           KV++   K+P H++D YFK
Sbjct: 128 KVNVSGVKIPEHINDEYFK 146


>Z83102-9|CAI79156.1|   82|Caenorhabditis elegans Hypothetical
           protein C54C8.12 protein.
          Length = 82

 Score = 30.3 bits (65), Expect = 0.79
 Identities = 17/45 (37%), Positives = 20/45 (44%)
 Frame = +1

Query: 25  FYPTQDKIRCRSHGKSFSKHVRRTRPNLTPGTVCILLAGRHAGKR 159
           FYPT+   + RSHG   +       PN     V    A RHAG R
Sbjct: 26  FYPTEISTKARSHGHPVNTLGESEDPNFQVDNVPGERARRHAGPR 70


>AF036705-8|AAB95169.1|  685|Caenorhabditis elegans Hypothetical
           protein F37C4.3 protein.
          Length = 685

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +1

Query: 25  FYPTQDKIRCRSHGKSFSKHVRRTRPN 105
           FYP+     C+S+   F +H+R+ +P+
Sbjct: 502 FYPSTQSATCKSNFTDFEEHIRQEKPD 528


>Z81492-4|CAB04031.1|  624|Caenorhabditis elegans Hypothetical
           protein E03H4.7 protein.
          Length = 624

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +1

Query: 28  YPTQDKIRCRSHGKSFSKHVRRTRPN 105
           YPTQD + C+ +  SF + +++  P+
Sbjct: 434 YPTQDNLACKQYYDSFVERIQQETPD 459


>Z72507-1|CAA96633.2|  172|Caenorhabditis elegans Hypothetical
           protein F17C11.1 protein.
          Length = 172

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
 Frame = +2

Query: 89  VGRDLTSL--PAQCAFCWR-ADTLASVSCSLECC 181
           V R+ T+L   ++C F W  A T A+ +CS  CC
Sbjct: 74  VNRNCTALVPDSKCVFKWAFATTAAATACSCTCC 107


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,289,379
Number of Sequences: 27780
Number of extensions: 189802
Number of successful extensions: 542
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 521
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 540
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 924715866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)