Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_L19
(466 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 26 2.5
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 26 2.5
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 26 2.5
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 26 2.5
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 26 2.5
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 26 2.5
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 26 2.5
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 26 2.5
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 26 2.5
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 26 2.5
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 26 2.5
SPAC31A2.14 |||WD repeat protein, human WRDR48 family|Schizosacc... 26 3.3
SPAC26F1.05 |mug106||sequence orphan|Schizosaccharomyces pombe|c... 26 3.3
SPBC651.11c |apm3||AP-3 adaptor complex subunit Apm3 |Schizosacc... 25 5.7
SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyc... 25 5.7
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom... 25 7.5
SPCC1529.01 ||SPCC794.14|membrane transporter|Schizosaccharomyce... 25 7.5
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 2.5
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +3
Query: 54 YENSLIFLKLKNNSNKRIEKNV 119
Y N L L NN +KR+E+N+
Sbjct: 868 YTNDTKLLNLLNNEDKRVEENI 889
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 2.5
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +3
Query: 54 YENSLIFLKLKNNSNKRIEKNV 119
Y N L L NN +KR+E+N+
Sbjct: 868 YTNDTKLLNLLNNEDKRVEENI 889
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 2.5
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +3
Query: 54 YENSLIFLKLKNNSNKRIEKNV 119
Y N L L NN +KR+E+N+
Sbjct: 868 YTNDTKLLNLLNNEDKRVEENI 889
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 2.5
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +3
Query: 54 YENSLIFLKLKNNSNKRIEKNV 119
Y N L L NN +KR+E+N+
Sbjct: 868 YTNDTKLLNLLNNEDKRVEENI 889
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 2.5
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +3
Query: 54 YENSLIFLKLKNNSNKRIEKNV 119
Y N L L NN +KR+E+N+
Sbjct: 868 YTNDTKLLNLLNNEDKRVEENI 889
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 2.5
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +3
Query: 54 YENSLIFLKLKNNSNKRIEKNV 119
Y N L L NN +KR+E+N+
Sbjct: 868 YTNDTKLLNLLNNEDKRVEENI 889
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 2.5
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +3
Query: 54 YENSLIFLKLKNNSNKRIEKNV 119
Y N L L NN +KR+E+N+
Sbjct: 868 YTNDTKLLNLLNNEDKRVEENI 889
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 2.5
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +3
Query: 54 YENSLIFLKLKNNSNKRIEKNV 119
Y N L L NN +KR+E+N+
Sbjct: 868 YTNDTKLLNLLNNEDKRVEENI 889
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 2.5
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +3
Query: 54 YENSLIFLKLKNNSNKRIEKNV 119
Y N L L NN +KR+E+N+
Sbjct: 868 YTNDTKLLNLLNNEDKRVEENI 889
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 2.5
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +3
Query: 54 YENSLIFLKLKNNSNKRIEKNV 119
Y N L L NN +KR+E+N+
Sbjct: 868 YTNDTKLLNLLNNEDKRVEENI 889
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 2.5
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +3
Query: 54 YENSLIFLKLKNNSNKRIEKNV 119
Y N L L NN +KR+E+N+
Sbjct: 868 YTNDTKLLNLLNNEDKRVEENI 889
>SPAC31A2.14 |||WD repeat protein, human WRDR48
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 962
Score = 25.8 bits (54), Expect = 3.3
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 51 IYENSLIFLKLKNNSNKRIEKNVWVL 128
IY + LK+ + S+KRI VW+L
Sbjct: 491 IYADECPLLKVDSPSDKRINLGVWIL 516
>SPAC26F1.05 |mug106||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 115
Score = 25.8 bits (54), Expect = 3.3
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +1
Query: 109 KKTYGY**QIFLYSTFIIFHTSNLVPDDTT 198
KK YG +IFL++ + F T+ P +T
Sbjct: 77 KKNYGVKLKIFLFTILLAFETNTFTPYTST 106
>SPBC651.11c |apm3||AP-3 adaptor complex subunit Apm3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 425
Score = 25.0 bits (52), Expect = 5.7
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +2
Query: 203 SLITKYFMVEEKYSNTPLYARDTFRRKSR*LKFAYIEVY 319
S + K+ V +NTP ARDT ++ K+A E +
Sbjct: 141 SFMNKFMAVTGLQTNTPTLARDTVPWRTAKAKYATNEFF 179
>SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 919
Score = 25.0 bits (52), Expect = 5.7
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +3
Query: 372 ITLILRTLYAIHTLIFYGKINLLSL 446
+ L+L TL+ I+T FY + L L
Sbjct: 296 LVLVLLTLFCIYTAAFYRSVRLARL 320
>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1692
Score = 24.6 bits (51), Expect = 7.5
Identities = 10/36 (27%), Positives = 21/36 (58%)
Frame = +2
Query: 128 DNKYFFIQHS*FFIQVI*YQTIRHNSLITKYFMVEE 235
+NK FF+ HS ++ + Y + +N+ +T ++ E
Sbjct: 511 NNKLFFLPHSTRYLVNLTYLDLSYNNFVTFPLIITE 546
>SPCC1529.01 ||SPCC794.14|membrane transporter|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 462
Score = 24.6 bits (51), Expect = 7.5
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = +1
Query: 136 IFLYSTFIIFHTSNLVPDDTTQFFNYEIFHGRRKVQ*Y 249
+F+Y +HT + PD FN + G R +Q Y
Sbjct: 372 LFIYGWTAQYHTHWIGPDIGAAMFNIGLMLGWRGIQTY 409
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,685,296
Number of Sequences: 5004
Number of extensions: 32581
Number of successful extensions: 79
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 176367270
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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