Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_L19
         (466 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0445 + 17818190-17818874,17819730-17819749                       31   0.35 
07_03_0998 - 23214548-23214567,23215424-23216120                       31   0.35 
06_03_0333 - 19658344-19658363,19659286-19659916                       31   0.35 
07_03_1794 - 29580767-29584189                                         31   0.46 
12_02_0706 + 22319293-22319803,22321625-22321766,22322223-223234...    29   1.4  
10_08_0934 + 21667688-21667860,21667995-21668093,21668528-216687...    29   1.4  
06_03_0086 + 16458881-16458952,16461795-16461966,16462621-164628...    28   3.2  
03_02_0179 - 6201393-6202365,6202470-6202610,6202728-6202767,620...    27   5.6  
08_02_0862 + 21979932-21980057,21982221-21982289,21982394-21982603     27   7.4  

>11_04_0445 + 17818190-17818874,17819730-17819749
          Length = 234

 Score = 31.5 bits (68), Expect = 0.35
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = +2

Query: 197 HNSLITKYFMVEEKYSNTPLYARDTFRRKSR*LKFAYIEVYD 322
           HN L  KY      YS+ PLY  D FRR+ R  K  ++ + +
Sbjct: 72  HNRLFAKY------YSDNPLYTDDQFRRRFRMRKHLFLHIVE 107


>07_03_0998 - 23214548-23214567,23215424-23216120
          Length = 238

 Score = 31.5 bits (68), Expect = 0.35
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = +2

Query: 197 HNSLITKYFMVEEKYSNTPLYARDTFRRKSR*LKFAYIEVYD 322
           HN L  KY      YS+ PLY  D FRR+ R  K  ++ + +
Sbjct: 76  HNRLFAKY------YSDNPLYTDDQFRRRFRMRKHLFLHIVE 111


>06_03_0333 - 19658344-19658363,19659286-19659916
          Length = 216

 Score = 31.5 bits (68), Expect = 0.35
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = +2

Query: 197 HNSLITKYFMVEEKYSNTPLYARDTFRRKSR*LKFAYIEVYD 322
           HN L  KY      YS+ PLY  D FRR+ R  K  ++ + +
Sbjct: 76  HNRLFAKY------YSDNPLYTDDQFRRRFRMRKHLFLHIVE 111


>07_03_1794 - 29580767-29584189
          Length = 1140

 Score = 31.1 bits (67), Expect = 0.46
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -3

Query: 332  SRFNHKPRYTRISVNAIFFGTYPSRKAGYYC 240
            S+F H P  TR+ +    FGT P +K+ + C
Sbjct: 1098 SQFKHFPTRTRVPLRNFLFGTKPKKKSIFAC 1128


>12_02_0706 +
           22319293-22319803,22321625-22321766,22322223-22323451,
           22323471-22323916,22324001-22324510
          Length = 945

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = +2

Query: 197 HNSLITKYFMVEEKYSNTPLYARDTFRRKSR*LKFAYIEVYD 322
           HN L  KY+     Y N PLY  D FRR+ R  K  ++ + +
Sbjct: 72  HNRLFAKYY-----YDN-PLYTDDQFRRRFRMRKHLFLRIVE 107


>10_08_0934 +
           21667688-21667860,21667995-21668093,21668528-21668736,
           21668786-21668925
          Length = 206

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +1

Query: 196 TQFFNYEIFHGRRKVQ*YPALREGYVPKKIAL 291
           + F  + +FHG++K Q  PAL +   P+KI L
Sbjct: 122 SSFLLHTLFHGQQKPQQQPALLQTLFPEKIIL 153


>06_03_0086 +
           16458881-16458952,16461795-16461966,16462621-16462889,
           16463045-16463316,16463409-16463533,16463852-16463964,
           16464579-16464692
          Length = 378

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 10/30 (33%), Positives = 21/30 (70%)
 Frame = -1

Query: 325 LIINLDIREFQLTRFSSERIPRVKRGITVL 236
           ++IN+ + E     F+ ERI ++K+G+T++
Sbjct: 251 VVINMPLTEKTRGMFNKERIAKMKKGVTIV 280


>03_02_0179 -
           6201393-6202365,6202470-6202610,6202728-6202767,
           6204390-6204791,6205567-6205696
          Length = 561

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 16/63 (25%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
 Frame = +3

Query: 252 RFTRGIRSEENRVN*NSRISRFMIKPTQNLIQKNNKSF*SITLILRTLY---AIHTLIFY 422
           R T  +  E N +   SR+++ +  P +NL+Q+ N+    I ++L+       I+ ++FY
Sbjct: 289 RGTDNVEPEFNEIVEASRVAQEVKHPFRNLLQRRNRPQLVIAVLLQIFQQFTGINAIMFY 348

Query: 423 GKI 431
             +
Sbjct: 349 APV 351


>08_02_0862 + 21979932-21980057,21982221-21982289,21982394-21982603
          Length = 134

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +2

Query: 182 YQTIRHNSLITKYFMVEEKYSNTPLYARDT 271
           YQTIRHN +I   + V + +++    +RDT
Sbjct: 51  YQTIRHNRMIPSRYQVSDDFNHV---SRDT 77


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,809,187
Number of Sequences: 37544
Number of extensions: 144673
Number of successful extensions: 251
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 251
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 931320312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)