Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_L19
         (466 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   0.70 
DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex det...    21   4.9  
DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex det...    21   4.9  
DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex det...    21   4.9  
DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex det...    21   4.9  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    21   4.9  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   6.5  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      21   6.5  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 24.2 bits (50), Expect = 0.70
 Identities = 13/55 (23%), Positives = 27/55 (49%)
 Frame = +3

Query: 66  LIFLKLKNNSNKRIEKNVWVLITNISLFNIHNFSYK*FSTRRYDTIL*LRNISWS 230
           L  L L+NNS  RIE N ++ + N+    + +   +    + ++ +  L  ++ S
Sbjct: 361 LQILDLRNNSIDRIESNAFLPLYNLHTLELSDNKLRTVGAQLFNGLFVLNRLTLS 415


>DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 4.9
 Identities = 10/38 (26%), Positives = 17/38 (44%)
 Frame = +3

Query: 6   RERERTSLEXXXXXXIYENSLIFLKLKNNSNKRIEKNV 119
           R RE   +       I+ N+  +    NN NK++  N+
Sbjct: 75  RSREPKIISSLSNNTIHNNNYKYNYNNNNYNKKLYYNI 112


>DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 4.9
 Identities = 10/38 (26%), Positives = 17/38 (44%)
 Frame = +3

Query: 6   RERERTSLEXXXXXXIYENSLIFLKLKNNSNKRIEKNV 119
           R RE   +       I+ N+  +    NN NK++  N+
Sbjct: 75  RSREPKIISSLSNNTIHNNNYKYNYNNNNYNKKLYYNI 112


>DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 4.9
 Identities = 10/38 (26%), Positives = 17/38 (44%)
 Frame = +3

Query: 6   RERERTSLEXXXXXXIYENSLIFLKLKNNSNKRIEKNV 119
           R RE   +       I+ N+  +    NN NK++  N+
Sbjct: 75  RSREPKIISSLSNNTIHNNNYKYNYNNNNYNKKLYYNI 112


>DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 4.9
 Identities = 10/38 (26%), Positives = 17/38 (44%)
 Frame = +3

Query: 6   RERERTSLEXXXXXXIYENSLIFLKLKNNSNKRIEKNV 119
           R RE   +       I+ N+  +    NN NK++  N+
Sbjct: 75  RSREPKIISSLSNNTIHNNNYKYNYNNNNYNKKLYYNI 112


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 21.4 bits (43), Expect = 4.9
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +3

Query: 342 IQKNNKSF*SITLILRTLYAIHT-LIFYGKI 431
           IQK+NKS+ S+  +L    A+ T LI  G +
Sbjct: 104 IQKDNKSYLSLRSLLSADVAVATPLISMGAL 134


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -3

Query: 329 RFNHKPRYTRISVNA 285
           R NHKP    I++NA
Sbjct: 494 RLNHKPFNFHITINA 508


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -3

Query: 329 RFNHKPRYTRISVNA 285
           R NHKP    I++NA
Sbjct: 494 RLNHKPFNFHITINA 508


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,192
Number of Sequences: 438
Number of extensions: 2551
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12436029
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)