Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_L18
         (190 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase Ogm2|Schizo...    31   0.015
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces...    31   0.026
SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyce...    26   0.75 
SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi...    25   1.7  
SPAC23A1.02c |||phosphoprotein phosphatase |Schizosaccharomyces ...    25   1.7  
SPAC6F6.13c |||DUF726 family protein|Schizosaccharomyces pombe|c...    24   3.0  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    23   7.0  
SPBC1683.05 |||thiamine transporter |Schizosaccharomyces pombe|c...    23   7.0  
SPAC212.04c |||S. pombe specific DUF999 family protein 1|Schizos...    22   9.3  
SPBC83.04 |apc15||anaphase-promoting complex subunit Apc15 |Schi...    22   9.3  

>SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase
           Ogm2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 739

 Score = 31.5 bits (68), Expect = 0.015
 Identities = 15/30 (50%), Positives = 18/30 (60%)
 Frame = +1

Query: 55  ASWTTLIIYSSFFILLYFNYKFLCKNLCTL 144
           A++ TL I   +F  L FNY FL   LCTL
Sbjct: 149 AAFGTLCIPLVYFTALNFNYSFLAATLCTL 178


>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1155

 Score = 30.7 bits (66), Expect = 0.026
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = +1

Query: 70  LIIYSSFFILLYFNYKFLC 126
           + IYSSF+I LYF ++F C
Sbjct: 1   MAIYSSFWIRLYFTFRFFC 19


>SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 25.8 bits (54), Expect = 0.75
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +1

Query: 28  AFWEPSRLAASWTTLIIYSSFFILLYFNYKFLCKNLCTL*F 150
           + W    L A W+ L++YSS F+   F       ++ T+ F
Sbjct: 109 SIWNIVPLNARWSALLLYSSSFMATTFQTHTFTNSIETIFF 149


>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 984

 Score = 24.6 bits (51), Expect = 1.7
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +1

Query: 7   GNVAIWPAFWEPSRL 51
           GNVAIW  FW   ++
Sbjct: 830 GNVAIWNTFWRDPQI 844


>SPAC23A1.02c |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 430

 Score = 24.6 bits (51), Expect = 1.7
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +2

Query: 32  SGNLPVWRRAGRH 70
           +GN+PVW  AG H
Sbjct: 150 NGNIPVWTIAGNH 162


>SPAC6F6.13c |||DUF726 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 778

 Score = 23.8 bits (49), Expect = 3.0
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +1

Query: 19  IWPAFWEPSRLAASWTTLIIYSS 87
           I+  FWEP  LA++  T+ I ++
Sbjct: 480 IYSVFWEPEMLASAGQTMNILAT 502


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2812

 Score = 22.6 bits (46), Expect = 7.0
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +1

Query: 34  WEPSRLAASWTTLIIYSSFFILLYF 108
           W+P R   S+   ++ SSFF L  F
Sbjct: 311 WDPHRSIRSFNLDLLNSSFFSLKNF 335


>SPBC1683.05 |||thiamine transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 559

 Score = 22.6 bits (46), Expect = 7.0
 Identities = 10/37 (27%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +1

Query: 28  AFWEPSRLAASWTTL-IIYSSFFILLYFNYKFLCKNL 135
           A W+P ++A +WT+     ++FF+ L +    + +N+
Sbjct: 330 AMWDPLQIANNWTSRGGRAAAFFMGLTYLVSMIAQNI 366


>SPAC212.04c |||S. pombe specific DUF999 family protein
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 288

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 10/20 (50%), Positives = 12/20 (60%), Gaps = 2/20 (10%)
 Frame = +1

Query: 61  WTTLIIYSSFFILLY--FNY 114
           W  ++IY   FILL   FNY
Sbjct: 145 WGPIVIYVGLFILLLSAFNY 164


>SPBC83.04 |apc15||anaphase-promoting complex subunit Apc15
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 136

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +3

Query: 36  GTFPSGGELDDIN 74
           G+FP  GE+DD++
Sbjct: 85  GSFPEEGEMDDMD 97


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 594,123
Number of Sequences: 5004
Number of extensions: 7072
Number of successful extensions: 24
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 2,362,478
effective HSP length: 43
effective length of database: 2,147,306
effective search space used: 40798814
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)