Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_L18
(190 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0068 - 20661060-20661506,20662702-20662824,20663513-206637... 27 2.8
11_03_0123 + 10318364-10318689,10320035-10320117,10320259-10320644 26 4.9
04_04_1263 - 32207636-32207938,32208020-32208170,32208263-322085... 26 4.9
01_07_0383 - 43195095-43195322,43195408-43195638,43196134-431964... 25 6.4
01_07_0333 - 42813789-42814073,42814229-42814315,42815083-428151... 25 6.4
11_08_0047 - 27991007-27991308,27991522-27991555 25 8.5
08_01_0718 - 6365506-6366047,6381623-6381937,6382857-6383082,638... 25 8.5
08_01_0167 + 1370733-1371316,1371590-1371765,1371865-1372101,137... 25 8.5
>09_06_0068 -
20661060-20661506,20662702-20662824,20663513-20663770,
20665635-20666027
Length = 406
Score = 26.6 bits (56), Expect = 2.8
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -1
Query: 61 SSPPDGKVPRRLAILPRCL 5
SSP DGK RLA+ +CL
Sbjct: 107 SSPADGKAADRLAVAVKCL 125
>11_03_0123 + 10318364-10318689,10320035-10320117,10320259-10320644
Length = 264
Score = 25.8 bits (54), Expect = 4.9
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +2
Query: 2 HEATWQYGQPSGNLPVWRRAGRH 70
+EA+W+ P+G+ P W +A RH
Sbjct: 220 YEASWE---PTGDAPGWTQAPRH 239
>04_04_1263 - 32207636-32207938,32208020-32208170,32208263-32208500,
32208604-32208814,32208927-32209108,32209196-32209297,
32210002-32211187,32212103-32212499,32212551-32212582,
32212885-32213157,32213307-32213394,32213486-32213723,
32213824-32214034,32214119-32214300,32214378-32214479,
32214801-32216224,32216751-32216822,32217688-32217719,
32218186-32218263,32218425-32218512,32218608-32218845,
32219060-32219162,32219386-32219558,32219644-32219745,
32219825-32220606,32220659-32221012,32224055-32224140,
32224250-32224400,32224534-32224771,32224876-32225119,
32225190-32225368,32225577-32225675,32225835-32227083
Length = 3195
Score = 25.8 bits (54), Expect = 4.9
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = -1
Query: 67 SSSSPPDGKVPRRL 26
S +PPDGK PRRL
Sbjct: 2346 SMGAPPDGKQPRRL 2359
>01_07_0383 -
43195095-43195322,43195408-43195638,43196134-43196454,
43196512-43196589,43196664-43197727,43197813-43198503,
43198743-43199541,43200010-43200158,43200159-43200286,
43200389-43200494,43200835-43200843,43201332-43201821,
43201896-43202554,43203759-43203851,43204044-43204196,
43205092-43205194,43205376-43205467,43206229-43206306,
43206987-43207049,43207339-43207512
Length = 1902
Score = 25.4 bits (53), Expect = 6.4
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = -2
Query: 42 RFPEGWPYCHV 10
RFPE W YC++
Sbjct: 376 RFPEAWSYCNI 386
>01_07_0333 -
42813789-42814073,42814229-42814315,42815083-42815172,
42815555-42815623,42815859-42815888,42816060-42816164,
42816454-42816549,42816647-42816760,42816862-42816955,
42817027-42817190
Length = 377
Score = 25.4 bits (53), Expect = 6.4
Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Frame = +1
Query: 37 EP-SRLAASWTTLIIYSSFFILLYF--NYKFLCKNL 135
EP S+LA S TTLI F+L F KF C+ L
Sbjct: 332 EPFSKLACSVTTLITEDEHFVLQRFQNELKFHCEEL 367
>11_08_0047 - 27991007-27991308,27991522-27991555
Length = 111
Score = 25.0 bits (52), Expect = 8.5
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +2
Query: 2 HEATWQYGQPSGNLPVWRRAGRH 70
+EA W+ PSG+ P W +A RH
Sbjct: 71 YEADWE---PSGDDPRWTQAPRH 90
>08_01_0718 -
6365506-6366047,6381623-6381937,6382857-6383082,
6383295-6383458,6383498-6383934,6384395-6384669
Length = 652
Score = 25.0 bits (52), Expect = 8.5
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +2
Query: 2 HEATWQYGQPSGNLPVWRRAGRH 70
+EA W+ P+G+ P W +A RH
Sbjct: 578 YEADWE---PTGDAPGWTQAPRH 597
>08_01_0167 +
1370733-1371316,1371590-1371765,1371865-1372101,
1372377-1372495,1372530-1372906,1373012-1373117,
1373520-1373606,1375367-1375421,1375775-1376311,
1377669-1377739,1377899-1377938,1379560-1379852
Length = 893
Score = 25.0 bits (52), Expect = 8.5
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +2
Query: 2 HEATWQYGQPSGNLPVWRRAGRH 70
+EA W+ P+G+ P W +A RH
Sbjct: 737 YEADWE---PTGDAPGWTQAPRH 756
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,988,667
Number of Sequences: 37544
Number of extensions: 47565
Number of successful extensions: 215
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 215
length of database: 14,793,348
effective HSP length: 42
effective length of database: 13,216,500
effective search space used: 264330000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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